AutismKB 2.0

Annotation Detail for C3orf20


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Basic Information Top
Gene Symbol:C3orf20 ( DKFZp434N1817 )
Gene Full Name: chromosome 3 open reading frame 20
Band: 3p25.1
Quick LinksEntrez ID:84077; OMIM: NA; Uniprot ID:CC020_HUMAN; ENSEMBL ID: ENSG00000131379; HGNC ID: 25320
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
819Phosphotyrosine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
14Phosphotyrosine(Syk)HMM predict
56Phosphoserine(CK1)HMM predict
59Phosphoserine(IKK)HMM predict
90Phosphothreonine(PKC)HMM predict
118Phosphothreonine(PKC)HMM predict
120Phosphoserine(CDC2)HMM predict
120Phosphoserine(CDK)HMM predict
201Phosphotyrosine(INSR)HMM predict
253Phosphothreonine(PKC)HMM predict
330Phosphoserine(ATM)HMM predict
345Phosphothreonine(PKC)HMM predict
347O-linkedHMM predict
347Phosphoserine(IKK)HMM predict
347Phosphoserine(ATM)HMM predict
347Phosphoserine(CDC2)HMM predict
349O-linkedHMM predict
349O-linkedHMM predict
401S-palmitoylHMM predict
402S-palmitoylHMM predict
492O-linkedHMM predict
501N-linkedHMM predict
599Phosphotyrosine(INSR)HMM predict
607Phosphoserine(ATM)HMM predict
609Phosphoserine(CK2)HMM predict
630Phosphoserine(CDC2)HMM predict
630Phosphoserine(CDK)HMM predict
636Phosphothreonine(PKA)HMM predict
645Phosphothreonine(PKC)HMM predict
708Phosphoserine(IKK)HMM predict
718Phosphoserine(ATM)HMM predict
720N-linkedHMM predict
721Phosphotyrosine(INSR)HMM predict
744Phosphoserine(IKK)HMM predict
819Phosphotyrosine(Syk)HMM predict
836Phosphoserine(IKK)HMM predict
839Phosphoserine(CK1)HMM predict
845Phosphoserine(CK1)HMM predict
851PhosphoserineHMM predict
866Phosphotyrosine(EGFR)HMM predict
872Phosphoserine(CK1)HMM predict
872Phosphoserine(CK2)HMM predict
892Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_032137
  • Location:chr3 14691657-14789543
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 14690361 14690515 154 1220
CTCF CD4SISSRdata 14690361 14690515 154 1220
CTCF G2GSE9613 14690328 14690501 173 1243
hScc1 G2GSE9613 14690328 14690501 173 1243
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 14797600 14797709 109 8111
CTCF CD4GSE12889 14807938 14808090 152 18471
CTCF CD4SISSRdata 14797600 14797709 109 8111
CTCF CD4SISSRdata 14807938 14808090 152 18471
CTCF HelaGSE12889 14797539 14797728 189 8090
CTCF G2GSE9613 14790315 14790598 283 913
CTCF G2GSE9613 14790926 14791384 458 1612
CTCF G2GSE9613 14807781 14808551 770 18623
Myc K562GSE19551 14797453 14797692 239 8029
Myc K562GSE19551 14807927 14808313 386 18577
hScc1 BcellGSE12603 14797201 14797407 206 7761
hScc1 BcellGSE12603 14807781 14808515 734 18605
hScc1 CdLSGSE12603 14797201 14797407 206 7761
hScc1 CdLSGSE12603 14807781 14808265 484 18480
hScc1 G2GSE9613 14806113 14806759 646 16893
hScc1 G2GSE9613 14807781 14808551 770 18623
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 14699579 14700081 502 0
CTCF G2GSE9613 14707115 14707354 239 0
CTCF G2GSE9613 14719745 14719918 173 0
CTCF G2GSE9613 14745701 14746025 324 0
CTCF G2GSE9613 14773289 14773616 327 0
CTCF G2GSE9613 14782636 14783729 1093 0
CTCF G2GSE9613 14784740 14784992 252 0
CTCF G2GSE9613 14786410 14786587 177 0
ER MCF7GSE19013 14693338 14693935 597 0
FOXA1 MCF7GSE15244 14694314 14694666 352 0
FOXA1 MCF7GSE15244 14741343 14741944 601 0
FOXA1 MCF7GSE15244 14743129 14743476 347 0
FOXA1 MCF7GSE15244 14781777 14782123 346 0
NFkBII GM12878GSE19485 14707272 14708680 1408 0
Oct1 H2O2-HelaGSE14283 14763160 14763193 33 0
Oct1 HelaGSE14283 14763161 14763193 32 0
TFAP2C MCF7GSE21234 14715080 14715746 666 0
TFAP2C MCF7GSE21234 14788577 14789150 573 0
USF1 HepG2E 14694314 14695776 1462 0
USF2 HepG2E 14694314 14695106 792 0
hScc1 BcellGSE12603 14719625 14719840 215 0
p130 shRbQuiescentGSE19898 14741447 14742377 930 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
17797 mRNA C3orf20 chr3 14691689 14789546 2483 EST chr3 14781462 14783945 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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