AutismKB 2.0

Annotation Detail for CHD6


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Basic Information Top
Gene Symbol:CHD6 ( CHD5,KIAA1335,RIGB )
Gene Full Name: chromodomain helicase DNA binding protein 6
Band: 20q12
Quick LinksEntrez ID:84181; OMIM: NA; Uniprot ID:CHD6_HUMAN; ENSEMBL ID: ENSG00000124177; HGNC ID: 19057
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
53Phosphoserine.
601DEAH box.
1069Phosphoserine.
1073Phosphoserine.
2041Phosphoserine.
Location(AA) Modifications Resource
1069Phosphoserine.Swiss-Prot 53.0
1073Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
13PhosphoserineHMM predict
19N-linkedHMM predict
62Phosphotyrosine(Jak)HMM predict
62Phosphotyrosine(Jak)HMM predict
77Phosphothreonine(PKA)HMM predict
161Phosphoserine(PKB)HMM predict
163Phosphothreonine(PKC)HMM predict
171Phosphoserine(IKK)HMM predict
179Phosphothreonine(PKC)HMM predict
185Phosphoserine(PKA)HMM predict
185Phosphoserine(PKC)HMM predict
185Phosphoserine(PKG)HMM predict
191Phosphothreonine(MAPK)HMM predict
191PhosphothreonineHMM predict
205Phosphothreonine(PKC)HMM predict
218N-linkedHMM predict
223Phosphoserine(CDC2)HMM predict
223Phosphoserine(IKK)HMM predict
227Phosphoserine(CK1)HMM predict
230Phosphoserine(CK1)HMM predict
230Phosphoserine(IKK)HMM predict
231Phosphothreonine(CK2)HMM predict
272O-linkedHMM predict
275O-linkedHMM predict
324N-linkedHMM predict
647Phosphoserine(ATM)HMM predict
664Phosphothreonine(CK2)HMM predict
767Phosphoserine(CAMK2)HMM predict
767Phosphoserine(CDC2)HMM predict
767Phosphoserine(MAPK)HMM predict
767Phosphoserine(IKK)HMM predict
825Phosphothreonine(PKC)HMM predict
867N-linkedHMM predict
1011N-linkedHMM predict
1059Phosphoserine(CK2)HMM predict
1075Phosphoserine(CK1)HMM predict
1080Phosphothreonine(PKC)HMM predict
1172N-linkedHMM predict
1218Phosphotyrosine(EGFR)HMM predict
1269Phosphotyrosine(Syk)HMM predict
1321Phosphoserine(CK1)HMM predict
1339Phosphothreonine(CK2)HMM predict
1359Phosphoserine(CK1)HMM predict
1360Phosphoserine(ATM)HMM predict
1381Phosphoserine(ATM)HMM predict
1386PhosphoserineHMM predict
1391O-linkedHMM predict
1436Phosphothreonine(PKA)HMM predict
1437Phosphoserine(PKA)HMM predict
1459Phosphotyrosine(Jak)HMM predict
1469Phosphotyrosine(Abl)HMM predict
1494Phosphoserine(CK1)HMM predict
1526Phosphotyrosine(EGFR)HMM predict
1526Phosphotyrosine(INSR)HMM predict
1526SulfotyrosineHMM predict
1594N-linkedHMM predict
1645Phosphotyrosine(INSR)HMM predict
1645Phosphotyrosine(SRC)HMM predict
1652Phosphoserine(CK2)HMM predict
1652PhosphoserineHMM predict
1673Phosphoserine(CK1)HMM predict
1719Phosphoserine(CDK)HMM predict
1725Phosphoserine(CK1)HMM predict
1812Phosphoserine(MAPK)HMM predict
1819N-linkedHMM predict
1832S-palmitoylHMM predict
1839Phosphoserine(CK1)HMM predict
1860Phosphoserine(ATM)HMM predict
1862N-linkedHMM predict
1864Phosphoserine(CK2)HMM predict
1864Phosphoserine(CK2)HMM predict
1899N-linkedHMM predict
1905N-linkedHMM predict
1921N-linkedHMM predict
1923Phosphothreonine(MAPK)HMM predict
2033SulfotyrosineHMM predict
2048Phosphotyrosine(INSR)HMM predict
2049PhosphoserineHMM predict
2053Phosphoserine(CK1)HMM predict
2053Phosphoserine(IKK)HMM predict
2055Phosphoserine(CK1)HMM predict
2056Phosphoserine(CK1)HMM predict
2119Phosphotyrosine(SRC)HMM predict
2119Phosphotyrosine(Syk)HMM predict
2122O-linkedHMM predict
2127O-linkedHMM predict
2127Phosphothreonine(CDK)HMM predict
2132O-linkedHMM predict
2139Phosphoserine(IKK)HMM predict
2171Phosphothreonine(CK2)HMM predict
2223Phosphoserine(CK1)HMM predict
2226O-linkedHMM predict
2226Phosphoserine(IKK)HMM predict
2230O-linkedHMM predict
2231O-linkedHMM predict
2231Phosphoserine(CDC2)HMM predict
2231Phosphoserine(CDK)HMM predict
2236O-linkedHMM predict
2274N-linkedHMM predict
2284Phosphothreonine(PKC)HMM predict
2325O-linkedHMM predict
2336O-linkedHMM predict
2337O-linkedHMM predict
2343O-linkedHMM predict
2346Phosphoserine(CK2)HMM predict
2347Phosphoserine(CK2)HMM predict
2347Phosphoserine(ATM)HMM predict
2400Phosphoserine(CK1)HMM predict
2426N-linkedHMM predict
2460Phosphoserine(IKK)HMM predict
2544O-linkedHMM predict
2547O-linkedHMM predict
2549O-linkedHMM predict
2553O-linkedHMM predict
2553Phosphoserine(IKK)HMM predict
2556O-linkedHMM predict
2556O-linkedHMM predict
2557O-linkedHMM predict
2562O-linkedHMM predict
2574Phosphoserine(CK1)HMM predict
2605O-linkedHMM predict
2680Phosphoserine(CK1)HMM predict
2680Phosphoserine(IKK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_032221
  • Location:chr20 39464583-39680546
  • strand:-
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 39454991 39455196 205 9490
RARA MCF7GSE15244 39454991 39455652 661 9262
TFAP2C MCF7GSE21234 39453656 39454335 679 10588
TFAP2C MCF7GSE21234 39454846 39456357 1511 8982
TFAP2C MCF7GSE21234 39461552 39462078 526 2769
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 39538153 39538667 514 0
FOXA1 MCF7GSE15244 39595433 39595830 397 0
FOXA1 eGFPGSE10845 39538153 39538667 514 0
FOXA1 eGFPGSE10845 39595433 39595830 397 0
Fos K562GSE19551 39680210 39680798 588 0
H3K4me3 colorectalcancer 39679171 39679553 382 0
H3ac HepG2E 39679101 39679710 609 0
KLF4 hESGSE17917 39574668 39575116 448 0
Oct4 hESGSE17917 39512091 39512331 240 0
P300 T30-glioblastomaGSE21026 39679143 39680721 1578 0
Rb shRbSenescenceGSE19898 39481705 39481934 229 0
TFAP2C MCF7GSE21234 39538012 39538821 809 0
TFAP2C MCF7GSE21234 39559809 39560374 565 0
hScc1 BcellGSE12603 39471214 39471431 217 0
hScc1 BcellGSE12603 39578955 39579182 227 0
hScc1 BcellGSE12603 39604210 39604435 225 0
hScc1 BcellGSE12603 39663647 39664172 525 0
hScc1 BcellGSE12603 39679686 39681258 1572 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
16376 mRNA chr20 39457481 39467547 2960 mRNA CHD6 chr20 39464583 39680547Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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