Annotation Detail for FAM96A

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Basic Information Top

Gene Symbol:	FAM96A ( FLJ22875 )
Gene Full Name:	family with sequence similarity 96, member A
Band:	15q22.31
Quick Links	Entrez ID:84191; OMIM: NA; Uniprot ID:FA96A_HUMAN; ENSEMBL ID: ENSG00000166797; HGNC ID: 26235
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

No data

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
p130	Senescent	GSE19898	62172957	62173771	814	105
p130	shRbQuiescent	GSE19898	62172870	62173749	879	50

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	62146793	62147040	247	4899
ER	E2-MCF7	GSE14664	62150725	62150757	32	1075
Fos	K562	GSE19551	62150448	62151070	622	1057
Sox2	hES	GSE18292	62146830	62147071	241	4865
TFAP2C	MCF7	GSE21234	62146535	62147163	628	4967
hScc1	Bcell	GSE12603	62146793	62147040	247	4899
hScc1	CdLS	GSE12603	62146793	62147040	247	4899
hScc1	G2	GSE9613	62146793	62147040	247	4899
p130	Senescent	GSE19898	62150535	62150942	407	1077
p130	shRbSenescent	GSE19898	62150577	62150802	225	1126

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	G2	GSE9613	62172468	62173123	655
ETS1	Jurkat	GSE17954	62172461	62173920	1459
H3ac	HepG2	E	62171380	62173743	2363
PHF8	293T	GSE20725	62172766	62173594	828
Rb	Growing	GSE19898	62172974	62173388	414
Rb	Quiescent	GSE19898	62172956	62173443	487
Rb	Senescent	GSE19898	62172854	62173431	577
TAF	Hela	GSE8489	62171346	62173743	2397
USF1	HepG2	E	62171522	62173743	2221
USF2	HepG2	E	62172080	62173626	1546
hScc1	Bcell	GSE12603	62171346	62171555	209
hScc1	Bcell	GSE12603	62172394	62173229	835
hScc1	CdLS	GSE12603	62171346	62171703	357
p130	Quiescent	GSE19898	62172942	62173447	505
p130	shRbSenescent	GSE19898	62172816	62173567	751

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-let-7b	hsa-let-7b	22	18668040
hsa-let-7b*	hsa-let-7b	22	18668040
hsa-miR-1	hsa-mir-1-2	18	18668040
hsa-miR-1	hsa-mir-1-1	20	18668040
hsa-miR-155	hsa-mir-155	21	18668040
hsa-miR-155*	hsa-mir-155	21	18668040
hsa-miR-16	hsa-mir-16-1	13	18668040
hsa-miR-16	hsa-mir-16-2	3	18668040
hsa-miR-30a	hsa-mir-30a	6	18668040
hsa-miR-30a*	hsa-mir-30a	6	18668040
hsa-miR-30b	hsa-mir-30b	8	18668040
hsa-miR-30b*	hsa-mir-30b	8	18668040
hsa-miR-30c	hsa-mir-30c-2	6	18668040
hsa-miR-30c	hsa-mir-30c-1	1	18668040
hsa-miR-30c-1*	hsa-mir-30c-1	1	18668040
hsa-miR-30c-2*	hsa-mir-30c-2	6	18668040
hsa-miR-30d	hsa-mir-30d	8	18668040
hsa-miR-30d*	hsa-mir-30d	8	18668040
hsa-miR-30e	hsa-mir-30e	1	18668040
hsa-miR-30e*	hsa-mir-30e	1	18668040

ID in Tarbase	Data Type	Support Type	miRNA	Gene	Direct Support	Publication
853	Unknown	pSILAC	let-7b	FAM96A	down 50-25%	18668040
914	Unknown	pSILAC	LNA_let-7b	FAM96A	up 25-50%	18668040
Ensembl	Protein Type	Differentially expressed in	Pathology or Event	Mis Regulation	Gene Expression	Tumour Involvement
ENSG00000166797		n_a	n_a	n_a	"epithelium, squamous cell, lymphocyte, muscle cell"	"benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
ENSG00000166797		n_a	n_a	n_a	"epithelium, squamous cell, lymphocyte, muscle cell"	"benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018