Annotation Detail for RAD54L
Basic Information Top
| Gene Symbol: | RAD54L ( HR54,RAD54A,hHR54,hRAD54 ) |
|---|---|
| Gene Full Name: | RAD54-like (S. cerevisiae) |
| Band: | 1p34.1 |
| Quick Links | Entrez ID:8438; OMIM: 603615; Uniprot ID:RAD54_HUMAN; ENSEMBL ID: ENSG00000085999; HGNC ID: 9826 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 299 | DEGH box. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 8 | Phosphoserine(ATM) | HMM predict |
| 31 | Phosphothreonine(CDK) | HMM predict |
| 31 | Phosphothreonine(MAPK) | HMM predict |
| 37 | Phosphoserine(IKK) | HMM predict |
| 38 | Phosphoserine(CK1) | HMM predict |
| 38 | Phosphoserine(PKA) | HMM predict |
| 38 | Phosphoserine(PKG) | HMM predict |
| 39 | Phosphoserine(CK1) | HMM predict |
| 49 | Phosphoserine(CDC2) | HMM predict |
| 68 | Phosphoserine(ATM) | HMM predict |
| 247 | Phosphoserine(CK2) | HMM predict |
| 306 | N-linked | HMM predict |
| 309 | Phosphotyrosine(SRC) | HMM predict |
| 309 | Phosphotyrosine(Syk) | HMM predict |
| 316 | N-linked | HMM predict |
| 317 | Phosphothreonine(PKC) | HMM predict |
| 417 | Phosphothreonine(CDK) | HMM predict |
| 448 | Phosphoserine(CK1) | HMM predict |
| 449 | Phosphoserine(CK1) | HMM predict |
| 512 | Phosphoserine | HMM predict |
| 521 | N-linked | HMM predict |
| 561 | Phosphoserine(CDC2) | HMM predict |
| 561 | Phosphoserine(IKK) | HMM predict |
| 564 | Phosphoserine(MAPK) | HMM predict |
| 564 | Phosphoserine(CDC2) | HMM predict |
| 673 | Phosphoserine(ATM) | HMM predict |
| 673 | Phosphoserine(CK1) | HMM predict |
| 697 | Phosphoserine(PKA) | HMM predict |
| 701 | Phosphoserine(CK1) | HMM predict |
| 728 | O-linked | HMM predict |
| 739 | Phosphoserine | HMM predict |
- RefSeq ID: NM_003579
- Location:chr1 46486003-46516731
- strand:+
| No data |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 46486166 | 46486729 | 563 | 0 |
| E2F4 | G0 | GSE7516 | 46485544 | 46487396 | 1852 | 0 |
| E2F4 | S | GSE7516 | 46485831 | 46487020 | 1189 | 0 |
| ETS1 | Jurkat | GSE17954 | 46485595 | 46486723 | 1128 | 0 |
| H3ac | HepG2 | E | 46487239 | 46487770 | 531 | 0 |
| LIN54 | G0 | GSE7516 | 46485831 | 46486729 | 898 | 0 |
| LIN9 | G0 | GSE7516 | 46485544 | 46487884 | 2340 | 0 |
| LIN9 | S | GSE7516 | 46485167 | 46487095 | 1928 | 0 |
| Rb | Quiescent | GSE19898 | 46485805 | 46486338 | 533 | 0 |
| Rb | Senescent | GSE19898 | 46485795 | 46486348 | 553 | 0 |
| Rb | shRbQuiescent | GSE19898 | 46485835 | 46486203 | 368 | 0 |
| TFAP2C | MCF7 | GSE21234 | 46509873 | 46510366 | 493 | 0 |
| p130 | Quiescent | GSE19898 | 46485677 | 46486422 | 745 | 0 |
| p130 | Senescent | GSE19898 | 46485766 | 46486538 | 772 | 0 |
| p130 | shRbQuiescent | GSE19898 | 46485743 | 46486437 | 694 | 0 |
| p130 | shRbSenescent | GSE19898 | 46485691 | 46486607 | 916 | 0 |
| p130 | G0 | GSE7516 | 46485831 | 46487481 | 1650 | 0 |
| p130 | S | GSE7516 | 46485167 | 46487275 | 2108 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 731 | mRNA | RAD54L | chr1 | 46425436 | 46456165 | 73 | mRNA | LRRC41 | chr1 | 46456092 | 46481295 | Sense/Antisense (SA) pairs |