AutismKB 2.0

Annotation Detail for COL25A1


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Basic Information Top
Gene Symbol:COL25A1 ( CLAC,CLACP )
Gene Full Name: collagen, type XXV, alpha 1
Band: 4q25
Quick LinksEntrez ID:84570; OMIM: 610004; Uniprot ID:COPA1_HUMAN; ENSEMBL ID: ENSG00000188517; HGNC ID: 18603
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_032518
  • Location:chr4 109964489-110443247
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K27me3 colorectalcancer 110443750 110444560 810 908
Nanog ESGSE20650 110450625 110450959 334 7545
TFAP2C MCF7GSE21234 110443540 110444042 502 544
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 109975513 109975694 181 0
CTCF CD4SISSRdata 109975513 109975694 181 0
CTCF JurkatGSE12889 109975419 109975691 272 0
CTCF G2GSE9613 109975239 109975794 555 0
CTCF G2GSE9613 110047626 110047960 334 0
CTCF G2GSE9613 110057918 110058102 184 0
CTCF G2GSE9613 110080855 110081160 305 0
CTCF G2GSE9613 110090685 110090902 217 0
CTCF G2GSE9613 110439250 110439504 254 0
CTCF G2GSE9613 110442773 110443315 542 0
Fos K562GSE19551 110128227 110128736 509 0
Fos K562GSE19551 110403287 110403555 268 0
H3K27me3 colorectalcancer 110441509 110442530 1021 0
Jun K562GSE19551 110128263 110128694 431 0
Myc K562GSE19551 110272118 110272680 562 0
Myc K562GSE19551 110314636 110315271 635 0
Myc K562GSE19551 110326241 110327015 774 0
NRSF JurkatGSE13047 110001746 110002571 825 0
NRSF mAbJurkat 109998140 110000697 2557 0
NRSF mAbJurkat 110001000 110004066 3066 0
NRSF-mono JurkatQuESTdata 110001791 110002462 671 0
NRSF-poly JurkatQuESTdata 110001868 110002403 535 0
Nanog ESGSE20650 110018539 110018786 247 0
Nanog ESGSE20650 110072331 110072771 440 0
Nanog hESGSE18292 109975433 109975787 354 0
Nanog hESGSE18292 110148757 110149158 401 0
Nanog hESGSE18292 110229116 110229518 402 0
Oct1 H2O2-HelaGSE14283 110062388 110062416 28 0
Oct1 H2O2-HelaGSE14283 110081811 110081858 47 0
Oct1 H2O2-HelaGSE14283 110198502 110198531 29 0
Oct1 H2O2-HelaGSE14283 110223092 110223118 26 0
Oct1 H2O2-HelaGSE14283 110243282 110243322 40 0
Oct1 H2O2-HelaGSE14283 110248211 110248255 44 0
Oct1 H2O2-HelaGSE14283 110325546 110325573 27 0
Oct1 H2O2-HelaGSE14283 110366328 110366356 28 0
Oct1 HelaGSE14283 109994638 109994675 37 0
Oct1 HelaGSE14283 109995298 109995387 89 0
Oct1 HelaGSE14283 110062387 110062416 29 0
Oct1 HelaGSE14283 110062526 110062565 39 0
Oct1 HelaGSE14283 110081818 110081861 43 0
Oct1 HelaGSE14283 110085845 110085898 53 0
Oct1 HelaGSE14283 110168247 110168276 29 0
Oct1 HelaGSE14283 110180316 110180346 30 0
Oct1 HelaGSE14283 110198500 110198535 35 0
Oct1 HelaGSE14283 110223091 110223129 38 0
Oct1 HelaGSE14283 110243283 110243320 37 0
Oct1 HelaGSE14283 110248223 110248255 32 0
Oct1 HelaGSE14283 110379100 110379131 31 0
Oct1 HelaGSE14283 110390730 110390762 32 0
Oct4 hESGSE17917 110069214 110069361 147 0
Oct4 hESGSE17917 110148725 110149008 283 0
P300 T0-glioblastomaGSE21026 109990177 109990962 785 0
PAX3-FKHR Rh4GSE19063 110306679 110307987 1308 0
Sox2 hESGSE18292 109975427 109975905 478 0
hScc1 BcellGSE12603 109975554 109975794 240 0
hScc1 CdLSGSE12603 109975348 109975943 595 0
hScc1 CdLSGSE12603 110439094 110439534 440 0
hScc1 G2GSE9613 109975130 109975794 664 0
hScc1 G2GSE9613 110080739 110081221 482 0
hScc1 G2GSE9613 110439164 110439504 340 0
p63 keratinocytesGSE17611 109974467 109975147 680 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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