AutismKB 2.0

Annotation Detail for GLIS2


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Basic Information Top
Gene Symbol:GLIS2 ( FLJ38247,NKL,NPHP7 )
Gene Full Name: GLIS family zinc finger 2
Band: 16p13.3
Quick LinksEntrez ID:84662; OMIM: 608539; Uniprot ID:GLIS2_HUMAN; ENSEMBL ID: ENSG00000126603; HGNC ID: 29450
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
245Phosphoserine.
Location(AA) Modifications Resource
245Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
51Phosphoserine(CDC2)HMM predict
54Phosphoserine(IKK)HMM predict
54Phosphoserine(ATM)HMM predict
74Phosphoserine(PKG)HMM predict
84Phosphoserine(CDC2)HMM predict
84Phosphoserine(ATM)HMM predict
84Phosphoserine(MAPK)HMM predict
91Phosphoserine(CDC2)HMM predict
91Phosphoserine(IKK)HMM predict
93N-linkedHMM predict
99Phosphoserine(CDC2)HMM predict
99Phosphoserine(CK1)HMM predict
129Phosphoserine(CDK)HMM predict
151Phosphothreonine(CDC2)HMM predict
254N-linkedHMM predict
258Phosphothreonine(PKC)HMM predict
263Phosphotyrosine(INSR)HMM predict
263Phosphotyrosine(Jak)HMM predict
288SulfotyrosineHMM predict
300S-palmitoylHMM predict
305Phosphothreonine(PKA)HMM predict
347Phosphotyrosine(Jak)HMM predict
347Phosphotyrosine(INSR)HMM predict
419Phosphoserine(CDC2)HMM predict
463Phosphothreonine(CDK)HMM predict
463Phosphothreonine(MAPK)HMM predict
470Phosphoserine(CK2)HMM predict
470Phosphoserine(IKK)HMM predict
470Phosphoserine(PKB)HMM predict
473Phosphoserine(ATM)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_032575
  • Location:chr16 4322225-4329598
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 4320399 4320628 229 1712
CTCF CD4SISSRdata 4320399 4320628 229 1712
CTCF G2GSE9613 4305234 4305396 162 16911
CTCF G2GSE9613 4306553 4307951 1398 14974
CTCF G2GSE9613 4309657 4309915 258 12440
CTCF G2GSE9613 4318131 4318266 135 4027
CTCF G2GSE9613 4320298 4320757 459 1698
KLF4 hESGSE17917 4306003 4306364 361 16042
Oct1 HelaGSE14283 4308469 4308506 37 13738
Oct1 HelaGSE14283 4315842 4315876 34 6367
TFAP2C MCF7GSE21234 4306673 4307749 1076 15015
hScc1 BcellGSE12603 4305123 4305396 273 16966
hScc1 BcellGSE12603 4320298 4320757 459 1698
hScc1 CdLSGSE12603 4320298 4320757 459 1698
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 4322212 4322446 234 0
CTCF G2GSE9613 4328355 4329158 803 0
ER MCF7GSE19013 4328779 4329346 567 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
9550 mRNA GLIS2 chr16 4322225 4327803 1077 HTC chr16 4325871 4327820Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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