Annotation Detail for SMARCA5
Basic Information Top
| Gene Symbol: | SMARCA5 ( ISWI,SNF2H,WCRF135,hISWI,hSNF2H ) |
|---|---|
| Gene Full Name: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 |
| Band: | 4q31.21 |
| Quick Links | Entrez ID:8467; OMIM: 603375; Uniprot ID:SMCA5_HUMAN; ENSEMBL ID: ENSG00000153147; HGNC ID: 11101 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 66 | Phosphoserine. | |
| 113 | Phosphothreonine. | |
| 115 | Phosphothreonine. | |
| 116 | Phosphoserine. | |
| 137 | Phosphoserine. | |
| 311 | DEAH box. | |
| 440 | N6-acetyllysine. | |
| 699 | Phosphoserine. | |
| 755 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 66 | Phosphoserine. | Swiss-Prot 53.0 |
| 66 | Phosphoserine | Phospho.ELM 6.0 |
| 113 | Phosphothreonine. | Swiss-Prot 53.0 |
| 113 | Phosphothreonine | Phospho.ELM 6.0 |
| 116 | Phosphoserine. | Swiss-Prot 53.0 |
| 116 | Phosphoserine | Phospho.ELM 6.0 |
| 137 | Phosphoserine | Phospho.ELM 6.0 |
| 137 | Phosphoserine. | Swiss-Prot 53.0 |
| 755 | Phosphoserine. | Swiss-Prot 53.0 |
| 755 | Phosphoserine | Phospho.ELM 6.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 18 | Phosphoserine(CK1) | HMM predict |
| 18 | O-linked | HMM predict |
| 23 | O-linked | HMM predict |
| 29 | Phosphoserine(IKK) | HMM predict |
| 30 | N-linked | HMM predict |
| 33 | N-linked | HMM predict |
| 47 | O-linked | HMM predict |
| 50 | O-linked | HMM predict |
| 50 | O-linked | HMM predict |
| 80 | Sulfotyrosine | HMM predict |
| 113 | Phosphothreonine(MAPK) | HMM predict |
| 116 | Phosphoserine(CDC2) | HMM predict |
| 146 | Phosphothreonine(PKA) | HMM predict |
| 221 | Phosphotyrosine(INSR) | HMM predict |
| 472 | Phosphotyrosine(Abl) | HMM predict |
| 549 | N-linked | HMM predict |
| 670 | Phosphothreonine(CK2) | HMM predict |
| 702 | N-linked | HMM predict |
| 704 | Phosphothreonine(PKA) | HMM predict |
| 719 | Phosphotyrosine(INSR) | HMM predict |
| 719 | Phosphotyrosine(EGFR) | HMM predict |
| 825 | Phosphoserine(CK1) | HMM predict |
| 876 | Phosphothreonine(CK2) | HMM predict |
| 876 | Phosphothreonine(MAPK) | HMM predict |
| 916 | Phosphoserine(PKG) | HMM predict |
| 946 | N-linked | HMM predict |
| 947 | Phosphotyrosine(INSR) | HMM predict |
| 948 | Phosphothreonine(CK2) | HMM predict |
| 970 | Phosphotyrosine(Syk) | HMM predict |
| 970 | Phosphotyrosine(SRC) | HMM predict |
| 970 | Phosphotyrosine(EGFR) | HMM predict |
| 1003 | Phosphothreonine(PKA) | HMM predict |
| 1032 | Phosphothreonine(PKC) | HMM predict |
- RefSeq ID: NM_003601
- Location:chr4 144654065-144694015
- strand:+
| No data |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 144654405 | 144654786 | 381 | 0 |
| ETS1 | Jurkat | GSE17954 | 144653604 | 144655424 | 1820 | 0 |
| Gata2 | K562 | GSE18868 | 144653839 | 144654896 | 1057 | 0 |
| H3K4me3 | colorectal | cancer | 144654519 | 144655895 | 1376 | 0 |
| H3ac | HepG2 | E | 144654749 | 144656387 | 1638 | 0 |
| PHF8 | 293T | GSE20725 | 144653455 | 144654886 | 1431 | 0 |
| PHF8 | HeLa | GSE20725 | 144653565 | 144654995 | 1430 | 0 |
| PHF8 | Hs68plusFBS | GSE20725 | 144653385 | 144654849 | 1464 | 0 |
| VDR | GM10855-stim | GSE22484 | 144653109 | 144655931 | 2822 | 0 |
| VDR | GM10861-stim | GSE22484 | 144653305 | 144655866 | 2561 | 0 |
| hScc1 | Bcell | GSE12603 | 144654272 | 144654749 | 477 | 0 |
| p130 | Senescent | GSE19898 | 144653936 | 144654652 | 716 | 0 |
| p130 | shRbQuiescent | GSE19898 | 144653802 | 144654797 | 995 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7c | hsa-let-7c | 21 | 19372056 |
| hsa-let-7c* | hsa-let-7c | 21 | 19372056 |
| hsa-let-7e | hsa-let-7e | 19 | 21213367 |
| hsa-let-7e* | hsa-let-7e | 19 | 21213367 |
| hsa-miR-100 | hsa-mir-100 | 11 | 20439489 |
| hsa-miR-100 | hsa-mir-100 | 11 | 19372056 |
| hsa-miR-100* | hsa-mir-100 | 11 | 20439489 |
| hsa-miR-100* | hsa-mir-100 | 11 | 19372056 |
| hsa-miR-125a-3p | hsa-mir-125a | 19 | 21213367 |
| hsa-miR-125b | hsa-mir-125b-1 | 11 | 21212412 |
| hsa-miR-125b | hsa-mir-125b-2 | 21 | 21212412 |
| hsa-miR-137 | hsa-mir-137 | 1 | 20439489 |
| hsa-miR-218 | hsa-mir-218-1 | 4 | 19372056 |
| hsa-miR-218 | hsa-mir-218-2 | 5 | 19372056 |
| hsa-miR-34a | hsa-mir-34a | 1 | 20439489 |
| hsa-miR-34a* | hsa-mir-34a | 1 | 20439489 |
| hsa-miR-99a | hsa-mir-99a | 21 | 21212412 |
| hsa-miR-99a* | hsa-mir-99a | 21 | 21212412 |
| hsa-miR-99b | hsa-mir-99b | 19 | 21213367 |
| hsa-miR-99b | hsa-mir-99b | 19 | 21212412 |
| hsa-miR-99b* | hsa-mir-99b | 19 | 21213367 |
| hsa-miR-99b* | hsa-mir-99b | 19 | 21212412 |
| No data |
Cis-Nats regulation