Annotation Detail for LNX1
Basic Information Top
| Gene Symbol: | LNX1 ( LNX,MPDZ,PDZRN2 ) |
|---|---|
| Gene Full Name: | ligand of numb-protein X 1 |
| Band: | 4q12 |
| Quick Links | Entrez ID:84708; OMIM: 609732; Uniprot ID:LNX1_HUMAN; ENSEMBL ID: ENSG00000072201; HGNC ID: 6657 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 184 | NPXY motif. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 22 | Phosphoserine(IKK) | HMM predict |
| 29 | Sulfotyrosine | HMM predict |
| 29 | Phosphotyrosine(SRC) | HMM predict |
| 64 | S-palmitoyl | HMM predict |
| 137 | Phosphothreonine(PKC) | HMM predict |
| 154 | O-linked | HMM predict |
| 161 | Phosphoserine(MAPK) | HMM predict |
| 161 | Phosphoserine(CDC2) | HMM predict |
| 161 | O-linked | HMM predict |
| 161 | O-linked | HMM predict |
| 165 | O-linked | HMM predict |
| 196 | Phosphoserine(CDC2) | HMM predict |
| 196 | Phosphoserine(ATM) | HMM predict |
| 204 | N-linked | HMM predict |
| 215 | Phosphothreonine(PKC) | HMM predict |
| 220 | Phosphoserine | HMM predict |
| 236 | Phosphoserine(PKB) | HMM predict |
| 236 | Phosphoserine(IKK) | HMM predict |
| 253 | N-linked | HMM predict |
| 385 | N-linked | HMM predict |
| 441 | Phosphoserine(CDC2) | HMM predict |
| 480 | N-linked | HMM predict |
| 493 | Phosphothreonine(MAPK) | HMM predict |
| 554 | Phosphothreonine(PKC) | HMM predict |
| 595 | Phosphotyrosine(Syk) | HMM predict |
| 603 | Phosphoserine(IKK) | HMM predict |
| 716 | Isoleucine | HMM predict |
- RefSeq ID: NM_032622
- Location:chr4 54020224-54119123
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 54136546 | 54137187 | 641 | 17743 |
| FOXA1 | MCF7 | GSE15244 | 54137593 | 54138291 | 698 | 18819 |
| FOXA1 | eGFP | GSE10845 | 54137593 | 54138291 | 698 | 18819 |
| FoxA1 | MCF7 | MACSdata | 54137586 | 54138058 | 472 | 18699 |
| Oct1 | Hela | GSE14283 | 54138938 | 54138986 | 48 | 19839 |
| p130 | Senescent | GSE19898 | 54119535 | 54119862 | 327 | 575 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 54047321 | 54047474 | 153 | 0 |
| CTCF | G2 | GSE9613 | 54053341 | 54053873 | 532 | 0 |
| CTCF | G2 | GSE9613 | 54054194 | 54054337 | 143 | 0 |
| CTCF | G2 | GSE9613 | 54061093 | 54061274 | 181 | 0 |
| CTCF | G2 | GSE9613 | 54071424 | 54071673 | 249 | 0 |
| CTCF | G2 | GSE9613 | 54089981 | 54090516 | 535 | 0 |
| CTCF | G2 | GSE9613 | 54093416 | 54093639 | 223 | 0 |
| CTCF | G2 | GSE9613 | 54108427 | 54108739 | 312 | 0 |
| FoxA1 | MCF7 | MACSdata | 54083289 | 54083565 | 276 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 54049135 | 54049176 | 41 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 54111982 | 54112018 | 36 | 0 |
| Oct1 | Hela | GSE14283 | 54049135 | 54049175 | 40 | 0 |
| Oct1 | Hela | GSE14283 | 54111598 | 54111641 | 43 | 0 |
| Oct1 | Hela | GSE14283 | 54111974 | 54112017 | 43 | 0 |
| P300 | T30-glioblastoma | GSE21026 | 54037170 | 54037853 | 683 | 0 |
| TFAP2C | MCF7 | GSE21234 | 54058444 | 54058847 | 403 | 0 |
| TFAP2C | MCF7 | GSE21234 | 54083164 | 54083601 | 437 | 0 |
| TFAP2C | MCF7 | GSE21234 | 54098467 | 54098977 | 510 | 0 |
| TFAP2C | MCF7 | GSE21234 | 54115638 | 54116106 | 468 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19680 | mRNA | FIP1L1 | chr4 | 54084790 | 54166770 | 374 | mRNA | LNX | chr4 | 54166395 | 54265295 | Sense/Antisense (SA) pairs |