Annotation Detail for HDGFRP2

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Basic Information Top

Gene Symbol:	HDGFRP2 ( HDGF2,MGC2641 )
Gene Full Name:	-
Band:	19p13.3
Quick Links	Entrez ID:84717; OMIM: NA; Uniprot ID:HDGR2_HUMAN; ENSEMBL ID: ENSG00000167674; HGNC ID:
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:22 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:0 results

Location(AA)	Modification
39	N6-acetyllysine.
230	Phosphoserine.
232	Phosphoserine.
234	Phosphoserine.
236	Phosphoserine.
240	Phosphoserine.
366	Phosphoserine.
369	Phosphoserine.
370	Phosphoserine.
395	Phosphoserine.
396	Phosphoserine.
397	Phosphoserine.
399	Phosphoserine.
454	Phosphoserine.
458	Phosphoserine.
490	Phosphoserine.
608	Phosphoserine.
625	Phosphoserine.
633	Phosphoserine.
634	Phosphoserine.
652	Phosphoserine.
664	Phosphoserine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_001001520
Location:chr19 4423254-4453212
strand:+

Upstream the gene:14 results
Downstream the gene:4 results
Inside the gene:12 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
H3ac	HepG2	E	4421399	4421671	272	1720
P300	T30-glioblastoma	GSE21026	4422121	4423460	1339	464
PHF8	HeLa	GSE20725	4422065	4423848	1783	298
TAF	Hela	GSE8489	4421399	4421671	272	1720
TAF	k562	GSE8489	4421399	4421671	272	1720
TAF	k562	GSE8489	4422473	4422675	202	681
TFAP2C	MCF7	GSE21234	4422490	4423089	599	465
USF1	HepG2	E	4421399	4421671	272	1720
USF1	HepG2	E	4422473	4423330	857	353
USF2	HepG2	E	4422473	4423330	857	353
p130	Senescent	GSE19898	4422405	4422958	553	573
p130	Senescent	GSE19898	4423016	4423263	247	115
p130	shRbQuiescent	GSE19898	4421879	4422387	508	1122
p130	shRbSenescent	GSE19898	4422380	4423242	862	444

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
hScc1	Bcell	GSE12603	4455603	4455876	273	2527
hScc1	Bcell	GSE12603	4456724	4457158	434	3729
p130	shRbSenescent	GSE19898	4455690	4455870	180	2568
p130	shRbSenescent	GSE19898	4457441	4457714	273	4365

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ER	E2-MCF7	GSE14664	4442301	4442335	34	0
ER	E2-MCF7	GSE14664	4450941	4451010	69	0
H3ac	HepG2	E	4424168	4425654	1486	0
Oct1	Hela	GSE14283	4434621	4434652	31	0
PHF8	293T	GSE20725	4422945	4423920	975	0
Rb	Growing	GSE19898	4425193	4425401	208	0
Rb	Senescent	GSE19898	4425114	4425654	540	0
Rb	shRbSenescence	GSE19898	4425334	4425705	371	0
hScc1	Bcell	GSE12603	4434550	4434755	205	0
p130	shRbQuiescent	GSE19898	4425036	4425770	734	0
p130	shRbQuiescent	GSE19898	4443127	4443447	320	0
p130	shRbSenescent	GSE19898	4425543	4425778	235	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
12529	mRNA	HDGF2	chr19	4423254	4453220	22	EST		chr19	4453145	4453732	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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