Annotation Detail for USP30
Basic Information Top
| Gene Symbol: | USP30 ( FLJ40511,MGC10702 ) |
|---|---|
| Gene Full Name: | ubiquitin specific peptidase 30 |
| Band: | 12q24.11 |
| Quick Links | Entrez ID:84749; OMIM: 612492; Uniprot ID:UBP30_HUMAN; ENSEMBL ID: ENSG00000135093; HGNC ID: 20065 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 115 | Phosphotyrosine(Syk) | HMM predict |
| 115 | Phosphotyrosine(Jak) | HMM predict |
| 133 | Phosphothreonine(CK2) | HMM predict |
| 171 | Phosphoserine(CK2) | HMM predict |
| 191 | Phosphoserine(CK1) | HMM predict |
| 210 | Phosphoserine(CDC2) | HMM predict |
| 286 | N-linked | HMM predict |
| 322 | S-palmitoyl | HMM predict |
| 335 | Phosphothreonine(CDC2) | HMM predict |
| 335 | Phosphothreonine(CDK) | HMM predict |
| 388 | Phosphothreonine(CDK) | HMM predict |
| 408 | Phosphoserine(MAPK) | HMM predict |
| 485 | Phosphoserine(PKG) | HMM predict |
| 485 | Phosphoserine(PKA) | HMM predict |
| 491 | Phosphoserine(CK1) | HMM predict |
| 510 | Phosphoserine(ATM) | HMM predict |
- RefSeq ID: NM_032663
- Location:chr12 107974773-108008564
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| GABP | Hela | GSE8489 | 107974373 | 107974674 | 301 | 250 |
| P300 | T30-glioblastoma | GSE21026 | 107974258 | 107975149 | 891 | 70 |
| Rb | shRbSenescence | GSE19898 | 107958981 | 107959176 | 195 | 15695 |
| TFAP2C | MCF7 | GSE21234 | 107974255 | 107974827 | 572 | 233 |
| p130 | Quiescent | GSE19898 | 107974341 | 107974506 | 165 | 350 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 107974640 | 107975299 | 659 | 0 |
| CTCF | G2 | GSE9613 | 107991591 | 107992309 | 718 | 0 |
| CTCF | G2 | GSE9613 | 108005079 | 108005225 | 146 | 0 |
| ETS1 | Jurkat | GSE17954 | 107974382 | 107975451 | 1069 | 0 |
| FOXA1 | MCF7 | GSE15244 | 107992057 | 107992413 | 356 | 0 |
| GABP | Hela | GSE8489 | 107975048 | 107976297 | 1249 | 0 |
| GABP | k562 | GSE8489 | 107974373 | 107976297 | 1924 | 0 |
| GABP | k562 | GSE8489 | 107976987 | 107977379 | 392 | 0 |
| H3K4me2 | HCT116 | GSE10453 | 107975263 | 107976042 | 779 | 0 |
| H3K4me3 | colorectal | cancer | 107975188 | 107976297 | 1109 | 0 |
| H3ac | HepG2 | E | 107975188 | 107976297 | 1109 | 0 |
| H3ac | HepG2 | E | 107991809 | 107992497 | 688 | 0 |
| LIN9 | S | GSE7516 | 107974640 | 107975226 | 586 | 0 |
| Oct1 | Hela | GSE14283 | 107995508 | 107995579 | 71 | 0 |
| Oct1 | Hela | GSE14283 | 107996202 | 107996279 | 77 | 0 |
| RARG | MCF7 | GSE15244 | 107975825 | 107976042 | 217 | 0 |
| RNAII | Tamoxifen-MCF7 | GSE14664 | 107985817 | 107985901 | 84 | 0 |
| hScc1 | Bcell | GSE12603 | 107974716 | 107975446 | 730 | 0 |
| hScc1 | G2 | GSE9613 | 107991662 | 107992337 | 675 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6578 | mRNA | USP30 | chr12 | 107953110 | 107986902 | 153 | EST | chr12 | 107953108 | 107954490 | Sense/Antisense (SA) pairs | |