Annotation Detail for RTN4IP1
Basic Information Top
| Gene Symbol: | RTN4IP1 ( MGC12934,NIMP ) |
|---|---|
| Gene Full Name: | reticulon 4 interacting protein 1 |
| Band: | 6q21 |
| Quick Links | Entrez ID:84816; OMIM: 610502; Uniprot ID:RT4I1_HUMAN; ENSEMBL ID: ENSG00000130347; HGNC ID: 18647 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 18 | S-palmitoyl | HMM predict |
| 34 | Phosphoserine(PKG) | HMM predict |
| 34 | Phosphoserine | HMM predict |
| 35 | Phosphothreonine(PKG) | HMM predict |
| 37 | Phosphoserine(IKK) | HMM predict |
| 40 | O-linked | HMM predict |
| 40 | O-linked | HMM predict |
| 41 | Phosphothreonine(PKC) | HMM predict |
| 202 | N-linked | HMM predict |
| 237 | Phosphoserine(ATM) | HMM predict |
| 299 | O-linked | HMM predict |
- RefSeq ID: NM_032730
- Location:chr6 107125597-107184065
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| PHF8 | Hs68minusFBS | GSE20725 | 107183519 | 107184665 | 1146 | 27 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 107137376 | 107137696 | 320 | 0 |
| ER | Fulvestrant-MCF7 | GSE14664 | 107135993 | 107136034 | 41 | 0 |
| Fos | K562 | GSE19551 | 107183678 | 107184430 | 752 | 0 |
| FoxA1 | MCF7 | MACSdata | 107146095 | 107146306 | 211 | 0 |
| H3K4me3 | colorectal | cancer | 107183047 | 107183615 | 568 | 0 |
| P300 | T0-glioblastoma | GSE21026 | 107183334 | 107184598 | 1264 | 0 |
| P300 | T30-glioblastoma | GSE21026 | 107129162 | 107129997 | 835 | 0 |
| P300 | T30-glioblastoma | GSE21026 | 107145765 | 107146584 | 819 | 0 |
| PHF8 | HeLa | GSE20725 | 107183452 | 107184572 | 1120 | 0 |
| RARA | MCF7 | GSE15244 | 107129254 | 107130116 | 862 | 0 |
| RARG | MCF7 | GSE15244 | 107129254 | 107130196 | 942 | 0 |
| STAT1 | HeLa | GSE12782 | 107128860 | 107130502 | 1642 | 0 |
| STAT1 | HeLa | GSE12783 | 107128894 | 107130811 | 1917 | 0 |
| STAT1 | IFN | SISSRdata | 107128922 | 107130148 | 1226 | 0 |
| hScc1 | Bcell | GSE12603 | 107183911 | 107184158 | 247 | 0 |
| hScc1 | CdLS | GSE12603 | 107164125 | 107164586 | 461 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22987 | mRNA | QRSL1 | chr6 | 107184145 | 107222103 | 914 | mRNA | RTN4IP1 | chr6 | 107125338 | 107185059 | Non-exonic Bidirectional (NOB) pairs |