AutismKB 2.0

Annotation Detail for LRCH3


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Basic Information Top
Gene Symbol:LRCH3 ( FLJ20994,FLJ43245,FLJ44976,MGC4126 )
Gene Full Name: leucine-rich repeats and calponin homology (CH) domain containing 3
Band: 3q29
Quick LinksEntrez ID:84859; OMIM: NA; Uniprot ID:LRCH3_HUMAN; ENSEMBL ID: ENSG00000186001; HGNC ID: 28637
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
324Phosphoserine.
415Phosphoserine.
419Phosphoserine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
16O-linkedHMM predict
18Phosphothreonine(PKC)HMM predict
255Phosphoserine(MAPK)HMM predict
352Phosphoserine(PKG)HMM predict
354Phosphotyrosine(SRC)HMM predict
400Phosphoserine(IKK)HMM predict
415Phosphoserine(PKA)HMM predict
415Phosphoserine(PKG)HMM predict
419PhosphoserineHMM predict
419Phosphoserine(CDC2)HMM predict
453Phosphoserine(CK1)HMM predict
514Phosphoserine(PKG)HMM predict
514Phosphoserine(IKK)HMM predict
516Phosphoserine(CDK)HMM predict
516Phosphoserine(CDC2)HMM predict
549Phosphoserine(CK1)HMM predict
583Phosphoserine(CDC2)HMM predict
595Phosphotyrosine(SRC)HMM predict
628Phosphoserine(CDK)HMM predict
628Phosphoserine(CDC2)HMM predict
637Phosphothreonine(PKC)HMM predict
637O-linkedHMM predict
638O-linkedHMM predict
640O-linkedHMM predict
641O-linkedHMM predict
643Phosphoserine(CK1)HMM predict
643Phosphoserine(IKK)HMM predict
707O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_032773
  • Location:chr3 199002541-199082852
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
PHF8 293TGSE20725 199002184 199002817 633 41
TAF HelaGSE8489 199000811 199001885 1074 1194
TAF k562GSE8489 199000629 199001885 1256 1285
TAF k562GSE8489 199002219 199002495 276 185
p130 SenescentGSE19898 199001677 199001961 284 723
p130 shRbQuiescentGSE19898 199002251 199002772 521 30
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 199089655 199089871 216 6911
RARA MCF7GSE15244 199084168 199084406 238 1435
Stat6 IL-4-hr4GSE17850 199089292 199089996 704 6792
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 199002532 199003149 617 0
CTCF G2GSE9613 199038417 199038628 211 0
FOXA1 MCF7GSE15244 199032157 199032631 474 0
H3ac HepG2E 199003003 199003698 695 0
NFkBII GM12892GSE19485 199001610 199003909 2299 0
NFkBII GM15510GSE19485 199001836 199003982 2146 0
Oct4 hESGSE17917 199066374 199066608 234 0
Oct4 hESGSE21916 199066326 199066613 287 0
P300 T30-glioblastomaGSE21026 199065831 199066720 889 0
PHF8 HeLaGSE20725 199001874 199003355 1481 0
PHF8 Hs68plusFBSGSE20725 199002095 199003475 1380 0
RARA MCF7GSE15244 199032157 199032631 474 0
RARA MCF7GSE15244 199061967 199062473 506 0
RARA MCF7GSE15244 199080369 199081348 979 0
RARG MCF7GSE15244 199037984 199038662 678 0
Rb QuiescentGSE19898 199002484 199002625 141 0
TAF k562GSE8489 199002932 199003698 766 0
p130 QuiescentGSE19898 199002538 199002824 286 0
p130 SenescentGSE19898 199002426 199002758 332 0
p130 shRbQuiescentGSE19898 199066248 199066866 618 0
p130 shRbQuiescentGSE19898 199067131 199067619 488 0
p130 shRbSenescentGSE19898 199002515 199002830 315 0
p63 keratinocytesGSE17611 199065909 199066966 1057 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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