AutismKB 2.0

Annotation Detail for C9orf3


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Basic Information Top
Gene Symbol:C9orf3 ( AOPEP,AP-O,APO,C90RF3,FLJ14675,FLJ40923,FLJ55832,ONPEP )
Gene Full Name: chromosome 9 open reading frame 3
Band: 9q22.32
Quick LinksEntrez ID:84909; OMIM: NA; Uniprot ID:AMPO_HUMAN; ENSEMBL ID: ENSG00000148120; HGNC ID: 1361
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
17N-linkedHMM predict
58Phosphoserine(CK2)HMM predict
96Phosphotyrosine(Syk)HMM predict
109Phosphothreonine(CK2)HMM predict
110Phosphoserine(CK1)HMM predict
110Phosphoserine(CK2)HMM predict
128O-linkedHMM predict
149S-palmitoylHMM predict
274Phosphoserine(CDC2)HMM predict
303O-linkedHMM predict
328Phosphotyrosine(Syk)HMM predict
361O-linkedHMM predict
366Phosphoserine(CDC2)HMM predict
366Phosphoserine(ATM)HMM predict
389N-linkedHMM predict
423S-palmitoylHMM predict
546Phosphoserine(ATM)HMM predict
648Phosphotyrosine(EGFR)HMM predict
648SulfotyrosineHMM predict
725Phosphoserine(CDC2)HMM predict
759Phosphothreonine(PKA)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_032823
  • Location:chr9 96528814-96889260
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Myc K562GSE19551 96528461 96529060 599 54
PHF8 HeLaGSE20725 96528261 96529159 898 105
Rb QuiescentGSE19898 96528588 96528945 357 48
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 96892160 96892193 33 2916
TFAP2C MCF7GSE21234 96894002 96894995 993 5238
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 96585109 96585998 889 0
CBP T30-glioblastomaGSE21026 96584990 96585938 948 0
CBP T30-glioblastomaGSE21026 96724174 96725561 1387 0
CBP T30-glioblastomaGSE21026 96739379 96740171 792 0
CTCF CD4GSE12889 96585112 96585506 394 0
CTCF CD4SISSRdata 96585112 96585506 394 0
ER E2-MCF7GSE14664 96705254 96705309 55 0
ER E2-MCF7GSE14664 96805159 96805191 32 0
ER E2-MCF7GSE14664 96849791 96849829 38 0
ER Fulvestrant-MCF7GSE14664 96621861 96621902 41 0
ER Fulvestrant-MCF7GSE14664 96705261 96705328 67 0
ER Fulvestrant-MCF7GSE14664 96713904 96713951 47 0
ER MCF7GSE19013 96584889 96585781 892 0
ER MCF7GSE19013 96752894 96753533 639 0
ER MCF7GSE19013 96793850 96794691 841 0
FOXA1 MCF7GSE15244 96584981 96585679 698 0
FOXA1 MCF7GSE15244 96619415 96620764 1349 0
FOXA1 MCF7GSE15244 96621141 96621651 510 0
FOXA1 MCF7GSE15244 96663329 96664598 1269 0
FOXA1 MCF7GSE15244 96669382 96670462 1080 0
FOXA1 MCF7GSE15244 96689694 96690357 663 0
FOXA1 MCF7GSE15244 96714349 96716476 2127 0
FOXA1 MCF7GSE15244 96721314 96722073 759 0
FOXA1 MCF7GSE15244 96723775 96726405 2630 0
FOXA1 MCF7GSE15244 96728072 96729028 956 0
FOXA1 MCF7GSE15244 96752642 96753307 665 0
FOXA1 MCF7GSE15244 96774008 96774733 725 0
FOXA1 MCF7GSE15244 96792061 96792599 538 0
FOXA1 MCF7GSE15244 96793379 96796020 2641 0
FOXA1 MCF7GSE15244 96810365 96810816 451 0
FOXA1 MCF7GSE15244 96830026 96830404 378 0
Fos K562GSE19551 96716255 96716735 480 0
Fos K562GSE19551 96739407 96740007 600 0
FoxA1 MCF7MACSdata 96620387 96620668 281 0
FoxA1 MCF7MACSdata 96621469 96621743 274 0
FoxA1 MCF7MACSdata 96669365 96669608 243 0
FoxA1 MCF7MACSdata 96721601 96722253 652 0
FoxA1 MCF7MACSdata 96724381 96724688 307 0
FoxA1 MCF7MACSdata 96753112 96753396 284 0
FoxA1 MCF7MACSdata 96791984 96792321 337 0
H3K4me3 colorectalcancer 96529337 96529669 332 0
H3ac HepG2E 96530569 96531056 487 0
H3ac HepG2E 96702384 96702765 381 0
H3ac HepG2E 96794219 96795097 878 0
H3ac HepG2E 96804767 96805508 741 0
H3ac HepG2E 96807772 96808944 1172 0
KLF4 hESGSE17917 96798049 96798343 294 0
Myc K562GSE19551 96581213 96581590 377 0
Myc K562GSE19551 96687498 96687850 352 0
Myc K562GSE19551 96827872 96828160 288 0
Nanog hESGSE18292 96686259 96686464 205 0
Oct1 H2O2-HelaGSE14283 96632441 96632470 29 0
Oct1 H2O2-HelaGSE14283 96667663 96667691 28 0
Oct1 H2O2-HelaGSE14283 96754370 96754425 55 0
Oct1 HelaGSE14283 96600027 96600059 32 0
Oct1 HelaGSE14283 96604161 96604188 27 0
Oct1 HelaGSE14283 96621866 96621904 38 0
Oct1 HelaGSE14283 96705260 96705318 58 0
Oct1 HelaGSE14283 96713901 96713949 48 0
Oct1 HelaGSE14283 96717350 96717385 35 0
Oct1 HelaGSE14283 96754364 96754447 83 0
Oct1 HelaGSE14283 96768387 96768435 48 0
Oct1 HelaGSE14283 96779336 96779378 42 0
Oct1 HelaGSE14283 96785648 96785702 54 0
P300 T0-glioblastomaGSE21026 96574606 96575616 1010 0
P300 T0-glioblastomaGSE21026 96585084 96586435 1351 0
P300 T0-glioblastomaGSE21026 96607270 96608607 1337 0
P300 T0-glioblastomaGSE21026 96724004 96725497 1493 0
P300 T0-glioblastomaGSE21026 96730496 96731824 1328 0
P300 T0-glioblastomaGSE21026 96739526 96740013 487 0
P300 T30-glioblastomaGSE21026 96585108 96586437 1329 0
P300 T30-glioblastomaGSE21026 96607090 96608977 1887 0
P300 T30-glioblastomaGSE21026 96723870 96725541 1671 0
P300 T30-glioblastomaGSE21026 96730355 96732179 1824 0
P300 T30-glioblastomaGSE21026 96739399 96740245 846 0
PHF8 HeLaGSE20725 96806347 96807843 1496 0
RARA MCF7GSE15244 96584726 96585738 1012 0
RARA MCF7GSE15244 96669055 96670462 1407 0
RARA MCF7GSE15244 96714498 96716476 1978 0
RARA MCF7GSE15244 96721314 96722073 759 0
RARA MCF7GSE15244 96793721 96796020 2299 0
RNAII Tamoxifen-MCF7GSE14664 96666307 96666399 92 0
Rb SenescentGSE19898 96747403 96747858 455 0
Rb shRbSenescenceGSE19898 96747583 96747784 201 0
STAT1 HeLaGSE12783 96648874 96650306 1432 0
STAT1 HeLaGSE12783 96738834 96740859 2025 0
STAT1 IFNSISSRdata 96739286 96740031 745 0
Stat6 IL-4-hr4GSE17850 96562689 96563251 562 0
Stat6 IL-4-hr4GSE17850 96714063 96714579 516 0
TAF HelaGSE8489 96594976 96595154 178 0
TAF HelaGSE8489 96671377 96671755 378 0
TAF HelaGSE8489 96673662 96673802 140 0
TAF HelaGSE8489 96807635 96808978 1343 0
TFAP2C MCF7GSE21234 96584964 96585756 792 0
TFAP2C MCF7GSE21234 96621177 96622056 879 0
TFAP2C MCF7GSE21234 96716277 96716907 630 0
TFAP2C MCF7GSE21234 96718835 96719571 736 0
TFAP2C MCF7GSE21234 96721324 96722784 1460 0
TFAP2C MCF7GSE21234 96724136 96725733 1597 0
TFAP2C MCF7GSE21234 96727853 96729040 1187 0
TFAP2C MCF7GSE21234 96791863 96792484 621 0
USF1 HepG2E 96707912 96708099 187 0
USF1 HepG2E 96833543 96834286 743 0
USF1 HepG2E 96866704 96867574 870 0
USF2 HepG2E 96767621 96768528 907 0
hScc1 BcellGSE12603 96585127 96585713 586 0
hScc1 BcellGSE12603 96807169 96807524 355 0
hScc1 BcellGSE12603 96847168 96847610 442 0
hScc1 CdLSGSE12603 96585090 96585738 648 0
hScc1 G2GSE9613 96585127 96585883 756 0
p130 SenescentGSE19898 96528584 96529206 622 0
p130 shRbQuiescentGSE19898 96528662 96529339 677 0
p130 shRbSenescentGSE19898 96528680 96529351 671 0
p63 keratinocytesGSE17611 96754981 96755868 887 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-27a hsa-mir-27a 19 19298589
hsa-miR-27a* hsa-mir-27a 19 19298589
hsa-miR-27b hsa-mir-27b 9 19298589
hsa-miR-27b* hsa-mir-27b 9 19298589
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
26759 mRNA C9orf3 chr9 94568548 94928995 6396 EST chr9 94770387 94776783 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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