Annotation Detail for HIST1H2BK
Basic Information Top
| Gene Symbol: | HIST1H2BK ( H2B/S,H2BFAiii,H2BFT,MGC131989 ) |
|---|---|
| Gene Full Name: | histone cluster 1, H2bk |
| Band: | 6p22.1 |
| Quick Links | Entrez ID:85236; OMIM: NA; Uniprot ID:H2B1K_HUMAN; ENSEMBL ID: ENSG00000197903; HGNC ID: 13954 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 6 | N6-acetyllysine. | |
| 12 | N6-acetyllysine. | |
| 13 | N6-acetyllysine. | |
| 15 | Phosphoserine; by STK4. | |
| 16 | N6-acetyllysine. | |
| 17 | N6-acetyllysine. | |
| 21 | N6-acetyllysine. | |
| 24 | N6-acetyllysine. | |
| 47 | N6-methyllysine. | |
| 58 | N6,N6-dimethyllysine. | |
| 109 | N6-methyllysine; alternate. | |
| 109 | N6-acetyllysine; alternate. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 6 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 12 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 13 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 15 | Phosphoserine (by STK4). | Swiss-Prot 53.0 |
| 16 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 17 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 21 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 24 | N6-acetyllysine. | Swiss-Prot 53.0 |
| 47 | N6-methyllysine. | Swiss-Prot 53.0 |
| 58 | N6,N6-dimethyllysine. | Swiss-Prot 53.0 |
| 109 | N6-acetyllysine; alternate. | Swiss-Prot 53.0 |
| 109 | N6-methyllysine; alternate. | Swiss-Prot 53.0 |
| 121 | Glycyl lysine isopeptide (Lys-Gly)(interchain with G-Cter in ubiquitin). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 15 | Phosphoserine(PKA) | HMM predict |
| 33 | Phosphoserine(PKA) | HMM predict |
| 33 | Phosphoserine(PKC) | HMM predict |
| 33 | Phosphoserine(PKG) | HMM predict |
| 37 | Phosphoserine(PKA) | HMM predict |
| 37 | Phosphoserine(PKC) | HMM predict |
| 37 | Phosphoserine(PKG) | HMM predict |
| 38 | Phosphotyrosine(PKG) | HMM predict |
- RefSeq ID: NM_080593
- Location:chr6 27214051-27222597
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| E2F4 | G0 | GSE7516 | 27222183 | 27223234 | 1051 | 111 |
| LIN9 | S | GSE7516 | 27221976 | 27223341 | 1365 | 61 |
| p130 | S | GSE7516 | 27222153 | 27223269 | 1116 | 114 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 27221726 | 27221940 | 214 | 0 |
| H3K4me2 | HCT116 | GSE10453 | 27220858 | 27222153 | 1295 | 0 |
| H3K4me3 | colorectal | cancer | 27214967 | 27216279 | 1312 | 0 |
| H3K4me3 | colorectal | cancer | 27221102 | 27223550 | 2448 | 0 |
| H3ac | HepG2 | E | 27222090 | 27222366 | 276 | 0 |
| LIN9 | G0 | GSE7516 | 27222090 | 27222506 | 416 | 0 |
| PHF8 | Hs68plusFBS | GSE20725 | 27221427 | 27223484 | 2057 | 0 |
| Pol2 | GM12878 | GSE19551 | 27214808 | 27216239 | 1431 | 0 |
| Pol2 | GM12878 | GSE19551 | 27220901 | 27223956 | 3055 | 0 |
| PolII | HeLa | GSE12783 | 27216712 | 27225246 | 8534 | 0 |
| RARA | MCF7 | GSE15244 | 27221494 | 27222978 | 1484 | 0 |
| RARG | MCF7 | GSE15244 | 27221419 | 27223091 | 1672 | 0 |
| Rb | Growing | GSE19898 | 27214868 | 27215233 | 365 | 0 |
| Rb | Quiescent | GSE19898 | 27221580 | 27222230 | 650 | 0 |
| Rb | Senescent | GSE19898 | 27214776 | 27215324 | 548 | 0 |
| Rb | shRbQuiescent | GSE19898 | 27214759 | 27215180 | 421 | 0 |
| Rb | shRbSenescence | GSE19898 | 27214877 | 27215158 | 281 | 0 |
| Rb | shRbSenescence | GSE19898 | 27221692 | 27221991 | 299 | 0 |
| TAF | Hela | GSE8489 | 27220858 | 27222940 | 2082 | 0 |
| TAF | k562 | GSE8489 | 27216734 | 27217632 | 898 | 0 |
| TAF | k562 | GSE8489 | 27219134 | 27219895 | 761 | 0 |
| TAF | k562 | GSE8489 | 27220232 | 27223550 | 3318 | 0 |
| VDR | GM10861-Unstim | GSE22484 | 27220033 | 27224823 | 4790 | 0 |
| VDR | GM10861-stim | GSE22484 | 27213949 | 27218187 | 4238 | 0 |
| VDR | GM10861-stim | GSE22484 | 27220197 | 27224590 | 4393 | 0 |
| p130 | Quiescent | GSE19898 | 27214825 | 27215228 | 403 | 0 |
| p130 | Quiescent | GSE19898 | 27221586 | 27222129 | 543 | 0 |
| p130 | Senescent | GSE19898 | 27214758 | 27215169 | 411 | 0 |
| p130 | Senescent | GSE19898 | 27221475 | 27222188 | 713 | 0 |
| p130 | shRbQuiescent | GSE19898 | 27214796 | 27215150 | 354 | 0 |
| p130 | shRbSenescent | GSE19898 | 27221394 | 27222231 | 837 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22285 | mRNA | HIST1H4I | chr6 | 27215066 | 27215436 | 370 | mRNA | HIST1H2BK | chr6 | 27214051 | 27222598 | Non-exonic Bidirectional (NOB) pairs |