AutismKB 2.0

Annotation Detail for COL27A1


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Basic Information Top
Gene Symbol:COL27A1 ( FLJ11895,KIAA1870,MGC11337 )
Gene Full Name: collagen, type XXVII, alpha 1
Band: 9q32
Quick LinksEntrez ID:85301; OMIM: 608461; Uniprot ID:CORA1_HUMAN; ENSEMBL ID: ENSG00000196739; HGNC ID: 22986
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
271N-linked (GlcNAc...) (Potential).
419Phosphoserine.
1769N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_032888
  • Location:chr9 115958051-116112794
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 115957370 115957645 275 544
CTCF CD4SISSRdata 115957370 115957645 275 544
H3ac HepG2E 115956486 115957092 606 1263
TFAP2C MCF7GSE21234 115948007 115948614 607 9741
hScc1 BcellGSE12603 115956007 115956377 370 1860
hScc1 BcellGSE12603 115957508 115957828 320 384
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 116093079 116093364 285 0
CTCF CD4GSE12889 116108033 116108209 176 0
CTCF CD4SISSRdata 116093079 116093364 285 0
CTCF CD4SISSRdata 116108033 116108209 176 0
CTCF HelaGSE12889 116108004 116108232 228 0
CTCF JurkatGSE12889 116093208 116093374 166 0
CTCF JurkatGSE12889 116108033 116108271 238 0
FOXA1 MCF7GSE15244 116026504 116026720 216 0
Fos K562GSE19551 115979827 115980255 428 0
Fos K562GSE19551 116025972 116026404 432 0
Fos K562GSE19551 116040905 116041528 623 0
Gata1 K562GSE18868 116040862 116041435 573 0
Gata2 K562GSE18868 116040865 116041494 629 0
H3ac HepG2E 115958287 115959709 1422 0
H3ac HepG2E 115960501 115962197 1696 0
Oct1 H2O2-HelaGSE14283 116103682 116103723 41 0
Oct1 HelaGSE14283 115993555 115993582 27 0
Oct1 HelaGSE14283 116028723 116028801 78 0
Oct1 HelaGSE14283 116067397 116067440 43 0
Oct1 HelaGSE14283 116103682 116103726 44 0
Rb GrowingGSE19898 116052367 116052545 178 0
Rb QuiescentGSE19898 116052383 116052638 255 0
TFAP2C MCF7GSE21234 115987586 115988226 640 0
hScc1 BcellGSE12603 115977250 115977614 364 0
hScc1 BcellGSE12603 116030158 116030588 430 0
hScc1 BcellGSE12603 116052124 116052300 176 0
hScc1 BcellGSE12603 116066764 116067186 422 0
hScc1 BcellGSE12603 116084025 116084336 311 0
hScc1 BcellGSE12603 116092628 116093478 850 0
hScc1 BcellGSE12603 116104975 116105229 254 0
hScc1 BcellGSE12603 116107953 116108453 500 0
hScc1 CdLSGSE12603 116093048 116093542 494 0
hScc1 G2GSE9613 116107953 116108686 733 0
p130 QuiescentGSE19898 115965820 115965978 158 0
p130 QuiescentGSE19898 116033320 116033483 163 0
p130 shRbQuiescentGSE19898 115977142 115977842 700 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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