Annotation Detail for CSDA
Basic Information Top
| Gene Symbol: | CSDA ( CSDA1,DBPA,ZONAB ) |
|---|---|
| Gene Full Name: | cold shock domain protein A |
| Band: | 12p13.1 |
| Quick Links | Entrez ID:8531; OMIM: 603437; Uniprot ID:DBPA_HUMAN; ENSEMBL ID: ENSG00000060138; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 2 | Phosphoserine. | |
| 34 | Phosphoserine. | |
| 38 | Phosphoserine. | |
| 79 | Phosphoserine. | |
| 134 | Phosphoserine. | |
| 201 | Phosphoserine. | |
| 203 | Phosphoserine. | |
| 204 | Phosphoserine. | |
| 287 | Phosphotyrosine (By similarity). | |
| 369 | Phosphoserine. | |
| 370 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 34 | Phosphoserine. | Swiss-Prot 53.0 |
| 34 | Phosphoserine | Phospho.ELM 6.0 |
| 134 | Phosphoserine. | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 8 | O-linked | HMM predict |
| 9 | O-linked | HMM predict |
| 10 | O-linked | HMM predict |
| 11 | O-linked | HMM predict |
| 12 | O-linked | HMM predict |
| 13 | O-linked | HMM predict |
| 34 | Phosphoserine(IKK) | HMM predict |
| 34 | Phosphoserine(CDC2) | HMM predict |
| 38 | O-linked | HMM predict |
| 65 | O-linked | HMM predict |
| 67 | O-linked | HMM predict |
| 72 | O-linked | HMM predict |
| 72 | O-linked | HMM predict |
| 75 | O-linked | HMM predict |
| 110 | N-linked | HMM predict |
| 156 | N-linked | HMM predict |
| 201 | Phosphoserine(CK1) | HMM predict |
| 201 | Phosphoserine(CK2) | HMM predict |
| 204 | O-linked | HMM predict |
| 284 | N-linked | HMM predict |
| 286 | Phosphothreonine(PKC) | HMM predict |
| 359 | O-linked | HMM predict |
- RefSeq ID: NM_003651
- Location:chr12 10742955-10767170
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| FOXA1 | DLD1 | GSE12801 | 10770864 | 10771229 | 365 | 3876 |
| NFkBII | GM12878 | GSE19485 | 10783532 | 10784889 | 1357 | 17040 |
| NFkBII | GM12892 | GSE19485 | 10783585 | 10784570 | 985 | 16907 |
| hScc1 | G2 | GSE9613 | 10766975 | 10767370 | 395 | 2 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| ER | Fulvestrant-MCF7 | GSE14664 | 10740526 | 10740598 | 72 | 2394 |
| Nanog | hES | GSE18292 | 10730355 | 10730570 | 215 | 12493 |
| Oct1 | Hela | GSE14283 | 10740529 | 10740602 | 73 | 2390 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 10766163 | 10767370 | 1207 | 0 |
| ER | Fulvestrant-MCF7 | GSE14664 | 10750361 | 10750423 | 62 | 0 |
| FOXA1 | MCF7 | GSE15244 | 10765580 | 10766257 | 677 | 0 |
| H3K4me3 | colorectal | cancer | 10765217 | 10766455 | 1238 | 0 |
| H3ac | HepG2 | E | 10765183 | 10766372 | 1189 | 0 |
| PHF8 | Hs68minusFBS | GSE20725 | 10765689 | 10766591 | 902 | 0 |
| TAF | Hela | GSE8489 | 10765361 | 10766372 | 1011 | 0 |
| hScc1 | Bcell | GSE12603 | 10766975 | 10767305 | 330 | 0 |
| p130 | shRbQuiescent | GSE19898 | 10765494 | 10766709 | 1215 | 0 |
Validated miRNA targets