Annotation Detail for FAM40A
Basic Information Top
| Gene Symbol: | FAM40A ( FLJ14743,KIAA1761,MGC148091,RP4-773N10.1 ) |
|---|---|
| Gene Full Name: | family with sequence similarity 40, member A |
| Band: | 1p13.3 |
| Quick Links | Entrez ID:85369; OMIM: NA; Uniprot ID:FA40A_HUMAN; ENSEMBL ID: ENSG00000143093; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 1 | N-acetylmethionine. | |
| 59 | Phosphoserine (By similarity). | |
| 335 | Phosphoserine. | |
| 560 | Phosphoserine (By similarity). | |
| 831 | Phosphoserine (By similarity). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 335 | Phosphoserine. | Swiss-Prot 53.0 |
| 335 | Phosphoserine | Phospho.ELM 6.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 62 | Phosphotyrosine(Syk) | HMM predict |
| 62 | Phosphotyrosine(Jak) | HMM predict |
| 65 | Phosphoserine(ATM) | HMM predict |
| 72 | Phosphotyrosine(Jak) | HMM predict |
| 72 | Phosphotyrosine(Syk) | HMM predict |
| 88 | Sulfotyrosine | HMM predict |
| 243 | Phosphothreonine(PKC) | HMM predict |
| 335 | Phosphoserine(PKA) | HMM predict |
| 335 | Phosphoserine(IKK) | HMM predict |
| 373 | Phosphotyrosine(Syk) | HMM predict |
| 378 | Phosphoserine(CK2) | HMM predict |
| 390 | Phosphoserine(CK1) | HMM predict |
| 475 | Phosphotyrosine(INSR) | HMM predict |
| 476 | Phosphothreonine(PKA) | HMM predict |
| 534 | Phosphothreonine(PKC) | HMM predict |
| 535 | O-linked | HMM predict |
| 630 | Phosphoserine(PKG) | HMM predict |
| 831 | Phosphoserine | HMM predict |
- RefSeq ID: NM_033088
- Location:chr1 110378763-110398777
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 110373801 | 110374031 | 230 | 4848 |
| CTCF | CD4 | SISSRdata | 110373801 | 110374031 | 230 | 4848 |
| CTCF | Hela | GSE12889 | 110373793 | 110374010 | 217 | 4862 |
| CTCF | G2 | GSE9613 | 110373790 | 110374045 | 255 | 4846 |
| ETS1 | Jurkat | GSE17954 | 110378043 | 110379291 | 1248 | 97 |
| P300 | T0-glioblastoma | GSE21026 | 110378279 | 110379230 | 951 | 9 |
| P300 | T30-glioblastoma | GSE21026 | 110378072 | 110379392 | 1320 | 32 |
| RARA | MCF7 | GSE15244 | 110378239 | 110378668 | 429 | 310 |
| TAF | k562 | GSE8489 | 110378239 | 110378772 | 533 | 258 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 110397962 | 110398300 | 338 | 0 |
| CTCF | CD4 | SISSRdata | 110397962 | 110398300 | 338 | 0 |
| CTCF | Hela | GSE12889 | 110397937 | 110398284 | 347 | 0 |
| CTCF | G2 | GSE9613 | 110378705 | 110379082 | 377 | 0 |
| CTCF | G2 | GSE9613 | 110397709 | 110398333 | 624 | 0 |
| H3K4me2 | HCT116 | GSE10453 | 110379439 | 110380003 | 564 | 0 |
| H3K4me3 | colorectal | cancer | 110379508 | 110380290 | 782 | 0 |
| H3ac | HepG2 | E | 110379157 | 110380290 | 1133 | 0 |
| Myc | hES | GSE17917 | 110378634 | 110379013 | 379 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 110395554 | 110395583 | 29 | 0 |
| Oct1 | Hela | GSE14283 | 110395554 | 110395594 | 40 | 0 |
| RARA | MCF7 | GSE15244 | 110379577 | 110380290 | 713 | 0 |
| hScc1 | Bcell | GSE12603 | 110397709 | 110398524 | 815 | 0 |
| hScc1 | CdLS | GSE12603 | 110397925 | 110398561 | 636 | 0 |
Validated miRNA targets