Annotation Detail for CDK13

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Basic Information Top

Gene Symbol:	CDK13 ( CDC2L,CDC2L5,CHED,FLJ35215,KIAA1791 )
Gene Full Name:	cyclin-dependent kinase 13
Band:	7p14.1
Quick Links	Entrez ID:8621; OMIM: 603309; Uniprot ID:CDK13_HUMAN; ENSEMBL ID: ENSG00000065883; HGNC ID: 1733
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
3	Phosphoserine.
238	Phosphoserine.
315	Phosphoserine.
317	Phosphoserine.
325	Phosphoserine.
340	Phosphoserine.
342	Phosphoserine.
348	Phosphoserine.
349	Phosphoserine.
358	Phosphoserine.
360	Phosphoserine.
367	Phosphoserine.
383	Phosphoserine.
385	Phosphoserine.
395	Phosphoserine.
397	Phosphoserine.
400	Phosphoserine.
409	Phosphoserine (By similarity).
413	Phosphoserine.
436	Phosphoserine.
437	Phosphoserine.
439	Phosphoserine.
441	Phosphoserine.
442	Phosphothreonine.
490	Phosphoserine.
492	Phosphothreonine.
494	Phosphothreonine.
525	Phosphoserine.
527	Phosphoserine.
556	N6-acetyllysine.
662	Phosphoserine.
664	Phosphoserine.
863	Phosphoserine.
870	Phosphotyrosine.
871	Phosphothreonine.
1048	Phosphoserine.
1054	Phosphoserine.
1056	Phosphothreonine.
1058	Phosphothreonine.
1066	Phosphoserine.
1143	Phosphothreonine.
1146	Phosphoserine.
1147	Phosphothreonine.
1246	Phosphothreonine.

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	39955454	39956476	1022	669
ETS1	Jurkat	GSE17954	39954812	39956834	2022	811
GABP	k562	GSE8489	39953604	39955582	1978	2041
H3ac	HepG2	E	39953702	39955709	2007	1928
NFkBII	GM15510	GSE19485	39954605	39957011	2406	826
PHF8	293T	GSE20725	39955067	39956969	1902	616
PHF8	HeLa	GSE20725	39954903	39957783	2880	291
PHF8	Hs68minusFBS	GSE20725	39954927	39956963	2036	689
PHF8	Hs68plusFBS	GSE20725	39955078	39956763	1685	713
Rb	Growing	GSE19898	39955315	39955522	207	1215
Rb	Growing	GSE19898	39955594	39955961	367	856
Rb	Quiescent	GSE19898	39955501	39955999	498	884
Rb	Senescent	GSE19898	39955567	39955981	414	860
Rb	shRbSenescence	GSE19898	39955530	39955809	279	964
TAF	Hela	GSE8489	39954177	39955709	1532	1691
TAF	k562	GSE8489	39954142	39955582	1440	1772
hScc1	Bcell	GSE12603	39955343	39955769	426	1078
p130	Quiescent	GSE19898	39955265	39955736	471	1133
p130	Quiescent	GSE19898	39956181	39956693	512	197
p130	Senescent	GSE19898	39955114	39956042	928	1056
p130	Senescent	GSE19898	39956190	39956628	438	225
p130	shRbQuiescent	GSE19898	39954944	39955957	1013	1183
p130	shRbQuiescent	GSE19898	39956086	39956739	653	221
p130	shRbSenescent	GSE19898	39955114	39956050	936	1052
p130	shRbSenescent	GSE19898	39956147	39956619	472	251
p63	keratinocytes	GSE17611	39943570	39944273	703	12712

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Nanog	ES	GSE20650	40101936	40102218	282	408

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	CD4	GSE12889	40058586	40058928	342
CTCF	CD4	SISSRdata	40058586	40058928	342
CTCF	G2	GSE9613	39956993	39958162	1169
ER	E2-MCF7	GSE14664	39962420	39962456	36
ER	E2-MCF7	GSE14664	39979004	39979036	32
H3K4me3	colorectal	cancer	39957989	39958530	541
H3ac	HepG2	E	39958018	39958717	699
Myc	K562	GSE19551	40084047	40084304	257
Oct1	Hela	GSE14283	39962423	39962459	36
Oct1	Hela	GSE14283	39989094	39989130	36
Oct1	Hela	GSE14283	40069418	40069449	31
P300	T30-glioblastoma	GSE21026	40014128	40014953	825
Rb	shRbSenescence	GSE19898	39957907	39958126	219
TAF	Hela	GSE8489	39983660	39984408	748
TAF	k562	GSE8489	39958052	39959845	1793
hScc1	Bcell	GSE12603	39957110	39958125	1015
hScc1	CdLS	GSE12603	40058608	40059093	485
hScc1	G2	GSE9613	39957110	39958162	1052
p130	Quiescent	GSE19898	39958009	39958218	209

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018