Annotation Detail for SSNA1
Basic Information Top
| Gene Symbol: | SSNA1 ( N14,NA-14,NA14 ) |
|---|---|
| Gene Full Name: | Sjogren syndrome nuclear autoantigen 1 |
| Band: | 9q34.3 |
| Quick Links | Entrez ID:8636; OMIM: 610882; Uniprot ID:SSNA1_HUMAN; ENSEMBL ID: ENSG00000176101; HGNC ID: 11321 |
| Relate to Another Database: | SFARIGene; denovo-db |
- RefSeq ID: NM_003731
- Location:chr9 139202953-139204635
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| VDR | GM10861-Unstim | GSE22484 | 139202277 | 139203583 | 1306 | 24 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CBP | T30-glioblastoma | GSE21026 | 139202436 | 139203630 | 1194 | 0 |
| ETS1 | Jurkat | GSE17954 | 139202419 | 139203776 | 1357 | 0 |
| P300 | T30-glioblastoma | GSE21026 | 139202409 | 139203828 | 1419 | 0 |
| PHF8 | HeLa | GSE20725 | 139201941 | 139204005 | 2064 | 0 |
| TFAP2C | MCF7 | GSE21234 | 139203262 | 139203827 | 565 | 0 |
| hScc1 | Bcell | GSE12603 | 139202776 | 139203479 | 703 | 0 |
| hScc1 | CdLS | GSE12603 | 139202848 | 139203634 | 786 | 0 |
| hScc1 | G2 | GSE9613 | 139202848 | 139203742 | 894 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7b | hsa-let-7b | 22 | 18668040 |
| hsa-let-7b* | hsa-let-7b | 22 | 18668040 |
| hsa-miR-1 | hsa-mir-1-2 | 18 | 18668040 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 18668040 |
| hsa-miR-155 | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-155* | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-16 | hsa-mir-16-1 | 13 | 18668040 |
| hsa-miR-16 | hsa-mir-16-2 | 3 | 18668040 |
| hsa-miR-30a | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30a* | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30b | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30b* | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-1* | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-2* | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30d | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30d* | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30e | hsa-mir-30e | 1 | 18668040 |
| hsa-miR-30e* | hsa-mir-30e | 1 | 18668040 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 1201 | Unknown | pSILAC | miR-1 | SSNA1 | down 50-25% | 18668040 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000176101 | n_a | n_a | n_a | "lymphocyte, muscle cell" | "benign tumour, malignant tumour, carcinoma, leukaemia, non-Hodgkin's, sarcoma" |
Cis-Nats regulation