AutismKB 2.0

Annotation Detail for CHRD


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Basic Information Top
Gene Symbol:CHRD ( MGC133038 )
Gene Full Name: chordin
Band: 3q27.1
Quick LinksEntrez ID:8646; OMIM: 603475; Uniprot ID:CHRD_HUMAN; ENSEMBL ID: ENSG00000090539; HGNC ID: 1949
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
217N-linked (GlcNAc...) (Potential).
351N-linked (GlcNAc...) (Potential).
365N-linked (GlcNAc...) (Potential).
434N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
217N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
351N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
365N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
434N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
82S-palmitoylHMM predict
131Phosphoserine(CK1)HMM predict
132Phosphoserine(CK1)HMM predict
132O-linkedHMM predict
132Phosphoserine(IKK)HMM predict
181Phosphoserine(ATM)HMM predict
190Phosphoserine(PKG)HMM predict
260Phosphothreonine(PKC)HMM predict
351N-linkedHMM predict
365N-linkedHMM predict
428O-linkedHMM predict
434N-linkedHMM predict
592Phosphothreonine(MAPK)HMM predict
592Phosphothreonine(CDC2)HMM predict
592Phosphothreonine(CDK)HMM predict
636Phosphoserine(CDC2)HMM predict
638MethylarginineHMM predict
676O-linkedHMM predict
676Phosphoserine(IKK)HMM predict
698MethylarginineHMM predict
731S-palmitoylHMM predict
735Phosphothreonine(PKA)HMM predict
747O-linkedHMM predict
842N-linkedHMM predict
882Phosphoserine(ATM)HMM predict
884Phosphoserine(IKK)HMM predict
888O-linkedHMM predict
900S-palmitoylHMM predict
928S-palmitoylHMM predict
929S-palmitoylHMM predict
940ProlineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003741
  • Location:chr3 185580554-185590310
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 185579301 185580179 878 815
TFAP2C MCF7GSE21234 185579380 185580261 881 734
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 185605090 185606504 1414 15487
CBP T30-glioblastomaGSE21026 185599923 185600391 468 9847
CTCF G2GSE9613 185590264 185590551 287 97
CTCF G2GSE9613 185591996 185592217 221 1796
CTCF G2GSE9613 185604865 185605299 434 14772
P300 T30-glioblastomaGSE21026 185599691 185600462 771 9766
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 185581125 185581348 223 0
CTCF G2GSE9613 185582155 185582489 334 0
CTCF G2GSE9613 185583297 185584183 886 0
CTCF G2GSE9613 185585313 185585828 515 0
CTCF G2GSE9613 185586908 185587483 575 0
CTCF G2GSE9613 185589513 185589959 446 0
Rb SenescentGSE19898 185581032 185581262 230 0
hScc1 BcellGSE12603 185581125 185581416 291 0
p130 shRbSenescentGSE19898 185581486 185581715 229 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-200b hsa-mir-200b 1 18573151
hsa-miR-200b* hsa-mir-200b 1 18573151
hsa-miR-25 hsa-mir-25 7 18573151
hsa-miR-25* hsa-mir-25 7 18573151
hsa-miR-26a hsa-mir-26a-1 3 18573151
hsa-miR-26a hsa-mir-26a-2 12 18573151
hsa-miR-30d hsa-mir-30d 8 18573151
hsa-miR-30d* hsa-mir-30d 8 18573151
hsa-miR-337-3p hsa-mir-337 14 18573151
hsa-miR-337-5p hsa-mir-337 14 18573151
hsa-miR-377 hsa-mir-377 14 18573151
hsa-miR-377* hsa-mir-377 14 18573151
hsa-miR-423-3p hsa-mir-423 17 18573151
hsa-miR-423-5p hsa-mir-423 17 18573151
hsa-miR-489 hsa-mir-489 7 18573151
hsa-miR-496 hsa-mir-496 14 18573151
hsa-miR-515-3p hsa-mir-515-1 19 18573151
hsa-miR-515-3p hsa-mir-515-2 19 18573151
hsa-miR-9 hsa-mir-9-1 1 18573151
hsa-miR-9 hsa-mir-9-2 5 18573151
hsa-miR-9 hsa-mir-9-3 15 18573151
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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