Annotation Detail for VAMP8

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Basic Information Top

Gene Symbol:	VAMP8 ( EDB,VAMP-8 )
Gene Full Name:	vesicle-associated membrane protein 8 (endobrevin)
Band:	2p11.2
Quick Links	Entrez ID:8673; OMIM: 603177; Uniprot ID:VAMP8_HUMAN; ENSEMBL ID: ENSG00000118640; HGNC ID: 12647
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:2 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:1 results

Location(AA)	Modification
1	N-acetylmethionine.
18	Phosphoserine (By similarity).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_003761
Location:chr2 85658227-85662663
strand:+

Upstream the gene:5 results
Downstream the gene:0 results
Inside the gene:3 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	85651323	85651654	331	6739
H3ac	HepG2	E	85656850	85657168	318	1219
Nanog	hES	GSE18292	85653121	85653505	384	4915
Sox2	hES	GSE18292	85653235	85653527	292	4847
TFAP2C	MCF7	GSE21234	85653249	85653614	365	4796

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	85658974	85659188	214	0
H3ac	HepG2	E	85657518	85660560	3042	0
TFAP2C	MCF7	GSE21234	85657976	85658855	879	0

Validated miRNA targets

miR Walk:2 results
Tarbase V5.0:0 results

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-96	hsa-mir-96	7	19943878
hsa-miR-96*	hsa-mir-96	7	19943878

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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