AutismKB 2.0

Annotation Detail for CDS2


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Basic Information Top
Gene Symbol:CDS2 ( FLJ38111 )
Gene Full Name: CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
Band: 20p12.3
Quick LinksEntrez ID:8760; OMIM: 603549; Uniprot ID:CDS2_HUMAN; ENSEMBL ID: ENSG00000101290; HGNC ID: 1801
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
21Phosphoserine.
23Phosphoserine.
31Phosphothreonine (By similarity).
33Phosphoserine.
37Phosphoserine.
47Phosphoserine (By similarity).
Location(AA) Modifications Resource
21Phosphoserine.Swiss-Prot 53.0
21PhosphoserinePhospho.ELM 6.0
31Phosphothreonine (By similarity).Swiss-Prot 53.0
33Phosphoserine (By similarity).Swiss-Prot 53.0
47Phosphoserine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
21Phosphoserine(CK1)HMM predict
21Phosphoserine(CK2)HMM predict
41Phosphoserine(PKA)HMM predict
41Phosphoserine(IKK)HMM predict
51Phosphothreonine(MAPK)HMM predict
255Phosphoserine(CDC2)HMM predict
284Phosphotyrosine(EGFR)HMM predict
295N-linkedHMM predict
298N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003818
  • Location:chr20 5055481-5119986
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
hScc1 BcellGSE12603 5055032 5055924 892 4
p130 shRbQuiescentGSE19898 5054975 5055828 853 80
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 5121024 5121277 253 1164
CTCF CD4GSE12889 5134142 5134347 205 14258
CTCF CD4SISSRdata 5121024 5121277 253 1164
CTCF CD4SISSRdata 5134142 5134347 205 14258
CTCF HelaGSE12889 5121047 5121238 191 1156
CTCF HelaGSE12889 5134070 5134472 402 14285
CTCF G2GSE9613 5134136 5134456 320 14310
H3ac HepG2E 5131063 5131799 736 11445
Myc K562GSE19551 5121047 5121230 183 1152
Nanog hESGSE18292 5121082 5121270 188 1190
P300 T30-glioblastomaGSE21026 5120941 5121552 611 1260
Rb GrowingGSE19898 5134099 5134273 174 14200
Sox2 hESGSE18292 5121063 5121405 342 1248
TFAP2C MCF7GSE21234 5134045 5134411 366 14242
hScc1 BcellGSE12603 5120890 5121618 728 1268
hScc1 BcellGSE12603 5123909 5124296 387 4116
hScc1 CdLSGSE12603 5120774 5121533 759 1167
hScc1 G2GSE9613 5134136 5134521 385 14342
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3ac HepG2E 5056138 5057895 1757 0
H3ac HepG2E 5074115 5074435 320 0
H3ac HepG2E 5077051 5077601 550 0
H3ac HepG2E 5082306 5082804 498 0
H3ac HepG2E 5094467 5095582 1115 0
H3ac HepG2E 5100984 5101792 808 0
NRSF mAbJurkat 5057293 5057724 431 0
P300 T30-glioblastomaGSE21026 5085214 5086030 816 0
PHF8 HeLaGSE20725 5055199 5056140 941 0
Rb GrowingGSE19898 5084751 5084929 178 0
Rb QuiescentGSE19898 5064478 5064701 223 0
Rb QuiescentGSE19898 5079354 5079471 117 0
Rb shRbQuiescentGSE19898 5064680 5064919 239 0
TAF HelaGSE8489 5113564 5113734 170 0
USF1 HepG2E 5079127 5079814 687 0
hScc1 CdLSGSE12603 5055032 5056487 1455 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
16031 mRNA CDS2 chr20 5055481 5119987 211 EST chr20 5117344 5118503Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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