AutismKB 2.0

Annotation Detail for TNFRSF11A


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Basic Information Top
Gene Symbol:TNFRSF11A ( CD265,FEO,LOH18CR1,ODFR,OFE,OPTB7,OSTS,PDB2,RANK,TRANCER )
Gene Full Name: tumor necrosis factor receptor superfamily, member 11a, NFKB activator
Band: 18q21.33
Quick LinksEntrez ID:8792; OMIM: 603499; Uniprot ID:TNR11_HUMAN; ENSEMBL ID: ENSG00000141655; HGNC ID: 11908
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
105N-linked (GlcNAc...) (Potential).
174N-linked (GlcNAc...) (Potential).
463Phosphoserine.
Location(AA) Modifications Resource
105N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
174N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
55Phosphotyrosine(INSR)HMM predict
61O-linkedHMM predict
63O-linkedHMM predict
66Phosphoserine(IKK)HMM predict
105N-linkedHMM predict
108Phosphothreonine(CDC2)HMM predict
131Phosphothreonine(PKA)HMM predict
164Phosphoserine(CK1)HMM predict
174N-linkedHMM predict
234S-palmitoylHMM predict
267Phosphoserine(IKK)HMM predict
267O-linkedHMM predict
318Phosphotyrosine(Abl)HMM predict
349Phosphotyrosine(SRC)HMM predict
349SulfotyrosineHMM predict
349PhosphotyrosineHMM predict
349Phosphotyrosine(Syk)HMM predict
354Phosphoserine(ATM)HMM predict
368Phosphoserine(IKK)HMM predict
371O-linkedHMM predict
383N-linkedHMM predict
403N-linkedHMM predict
437Phosphoserine(CDC2)HMM predict
463Phosphoserine(CDC2)HMM predict
463Phosphoserine(CDK)HMM predict
485Phosphoserine(CK2)HMM predict
506MethylarginineHMM predict
511O-linkedHMM predict
511Phosphoserine(IKK)HMM predict
513O-linkedHMM predict
514O-linkedHMM predict
514Phosphoserine(CDC2)HMM predict
524N-linkedHMM predict
528N-linkedHMM predict
530N-linkedHMM predict
580Phosphoserine(PKA)HMM predict
580Phosphoserine(IKK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003839
  • Location:chr18 58143527-58204481
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 58143312 58143610 298 67
CTCF CD4SISSRdata 58143312 58143610 298 67
Nanog hESGSE18292 58141841 58142181 340 1517
hScc1 BcellGSE12603 58143137 58143387 250 266
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 58149574 58150379 805 0
CTCF G2GSE9613 58202990 58203324 334 0
ER E2-MCF7GSE14664 58181682 58181714 32 0
H3K4me3 colorectalcancer 58144625 58145017 392 0
H3ac HepG2E 58147421 58148781 1360 0
Nanog ESGSE20650 58185356 58185599 243 0
Nanog hESGSE18292 58185272 58185770 498 0
Nanog hESGSE18292 58192443 58193127 684 0
Oct1 H2O2-HelaGSE14283 58176938 58177013 75 0
Oct1 HelaGSE14283 58167502 58167547 45 0
Sox2 hESGSE18292 58192511 58192938 427 0
hScc1 BcellGSE12603 58143941 58144325 384 0
hScc1 BcellGSE12603 58147505 58148044 539 0
p130 SenescentGSE19898 58147863 58148105 242 0
p130 shRbSenescentGSE19898 58143724 58144094 370 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
12247 mRNA TNFRSF11A chr18 58143527 58204482 488 mRNA chr18 58203705 58204193Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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