AutismKB 2.0

Annotation Detail for ALDH1A2


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Basic Information Top
Gene Symbol:ALDH1A2 ( MGC26444,RALDH(II),RALDH2,RALDH2-T )
Gene Full Name: aldehyde dehydrogenase 1 family, member A2
Band: 15q21.3
Quick LinksEntrez ID:8854; OMIM: 603687; Uniprot ID:AL1A2_HUMAN; ENSEMBL ID: ENSG00000128918; HGNC ID: 15472
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
122Phosphothreonine (By similarity).
Location(AA) Modifications Resource
Location(AA) Modification Resource
28Phosphoserine(CDC2)HMM predict
137Phosphotyrosine(Jak)HMM predict
150SulfotyrosineHMM predict
215Phosphothreonine(CDK)HMM predict
215Phosphothreonine(MAPK)HMM predict
284Phosphothreonine(PKA)HMM predict
303SulfotyrosineHMM predict
333Phosphotyrosine(SRC)HMM predict
333Phosphotyrosine(Syk)HMM predict
333Phosphotyrosine(EGFR)HMM predict
340Phosphoserine(PKG)HMM predict
351Phosphoserine(CDC2)HMM predict
368Phosphotyrosine(Syk)HMM predict
406N-linkedHMM predict
439N-linkedHMM predict
440N-linkedHMM predict
459Phosphothreonine(PKC)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003888
  • Location:chr15 56032919-56145197
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 56150391 56150615 224 5306
CTCF CD4SISSRdata 56150391 56150615 224 5306
CTCF HelaGSE12889 56150446 56150600 154 5326
CTCF JurkatGSE12889 56150428 56150706 278 5370
CTCF G2GSE9613 56145562 56146115 553 641
CTCF G2GSE9613 56150452 56150626 174 5342
H3K27me3 colorectalcancer 56146186 56146708 522 1250
hScc1 BcellGSE12603 56145641 56146153 512 700
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 56092919 56094634 1715 0
ER E2-MCF7GSE14664 56125082 56125183 101 0
ER E2-MCF7GSE14664 56128711 56128743 32 0
H3K27me3 colorectalcancer 56142843 56144622 1779 0
Nanog ESGSE20650 56129178 56129813 635 0
Nanog ESGSE20650 56143562 56144005 443 0
Nanog hESGSE18292 56122834 56122977 143 0
Nanog hESGSE18292 56129010 56129907 897 0
Nanog hESGSE18292 56143366 56144128 762 0
P300 T0-glioblastomaGSE21026 56118149 56118700 551 0
P300 T30-glioblastomaGSE21026 56117986 56118710 724 0
hScc1 BcellGSE12603 56144713 56145032 319 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
8871 mRNA LOC283665 chr15 56144714 56152194 175 mRNA ALDH1A2 chr15 56032918 56145198Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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