AutismKB 2.0

Annotation Detail for LDB1


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Basic Information Top
Gene Symbol:LDB1 ( CLIM2,NLI )
Gene Full Name: LIM domain binding 1
Band: 10q24.32
Quick LinksEntrez ID:8861; OMIM: 603451; Uniprot ID:LDB1_HUMAN; ENSEMBL ID: ENSG00000198728; HGNC ID: 6532
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
302Phosphoserine.
306Phosphothreonine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
29N-linkedHMM predict
44N-linkedHMM predict
193N-linkedHMM predict
201N-linkedHMM predict
205N-linkedHMM predict
266Phosphoserine(PKA)HMM predict
266Phosphoserine(IKK)HMM predict
272O-linkedHMM predict
279N-linkedHMM predict
280N-linkedHMM predict
282N-linkedHMM predict
287Phosphoserine(IKK)HMM predict
287Phosphoserine(CDC2)HMM predict
296Phosphoserine(ATM)HMM predict
361O-linkedHMM predict
361Phosphoserine(ATM)HMM predict
364Phosphoserine(CK1)HMM predict
364Phosphoserine(IKK)HMM predict
368N-linkedHMM predict
371Phosphoserine(IKK)HMM predict
371Phosphoserine(ATM)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003893
  • Location:chr10 103857316-103864691
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 103869152 103869816 664 4793
H3K4me2 HCT116GSE10453 103865528 103865911 383 1028
H3K4me2 HCT116GSE10453 103866228 103866797 569 1821
H3ac HepG2E 103864642 103865911 1269 585
H3ac HepG2E 103866228 103866580 352 1713
H3ac HepG2E 103867791 103868751 960 3580
PHF8 HeLaGSE20725 103869513 103870803 1290 5467
Pol2 GM12878GSE19551 103864436 103865219 783 136
Rb SenescentGSE19898 103864661 103864889 228 84
TAF k562GSE8489 103865702 103865911 209 1115
TFAP2C MCF7GSE21234 103864419 103865008 589 22
hScc1 BcellGSE12603 103867400 103867837 437 2927
hScc1 CdLSGSE12603 103870023 103870496 473 5568
p130 QuiescentGSE19898 103867349 103867494 145 2730
p130 QuiescentGSE19898 103871505 103871701 196 6912
p130 SenescentGSE19898 103867321 103867728 407 2833
p130 shRbQuiescentGSE19898 103867587 103868107 520 3156
p130 shRbSenescentGSE19898 103864629 103864788 159 17
p130 shRbSenescentGSE19898 103866877 103867059 182 2277
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 103856191 103856770 579 836
P300 T30-glioblastomaGSE21026 103856100 103856759 659 887
p130 SenescentGSE19898 103839170 103839336 166 18064
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K4me2 HCT116GSE10453 103862972 103863555 583 0
H3ac HepG2E 103861622 103861790 168 0
H3ac HepG2E 103862548 103863882 1334 0
hScc1 BcellGSE12603 103864122 103864642 520 0
hScc1 G2GSE9613 103864122 103864987 865 0
Validated miRNA targets Top
Cis-Nats regulation Top

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  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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