Annotation Detail for CPNE3
Basic Information Top
| Gene Symbol: | CPNE3 ( CPN3,KIAA0636,PRO1071 ) |
|---|---|
| Gene Full Name: | copine III |
| Band: | 8q21.3 |
| Quick Links | Entrez ID:8895; OMIM: 604207; Uniprot ID:CPNE3_HUMAN; ENSEMBL ID: ENSG00000085719; HGNC ID: 2316 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 2 | N-acetylalanine. | |
| 242 | Phosphoserine (By similarity). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 242 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 12 | N-linked | HMM predict |
| 17 | N-linked | HMM predict |
| 36 | N-linked | HMM predict |
| 84 | N-linked | HMM predict |
| 169 | Phosphothreonine(PKA) | HMM predict |
| 203 | Phosphotyrosine(INSR) | HMM predict |
| 291 | N-linked | HMM predict |
| 307 | Phosphoserine(MAPK) | HMM predict |
| 307 | Phosphoserine(IKK) | HMM predict |
| 313 | Phosphotyrosine(INSR) | HMM predict |
| 366 | N-linked | HMM predict |
| 369 | N-linked | HMM predict |
| 398 | Phosphoserine(CDC2) | HMM predict |
| 476 | Phosphoserine(CDC2) | HMM predict |
| 526 | Proline | HMM predict |
- RefSeq ID: NM_003909
- Location:chr8 87595787-87642841
- strand:+
| No data |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 87595548 | 87596244 | 696 | 0 |
| CTCF | G2 | GSE9613 | 87639327 | 87639583 | 256 | 0 |
| ER | E2-MCF7 | GSE14664 | 87602647 | 87602734 | 87 | 0 |
| ER | E2-MCF7 | GSE14664 | 87616945 | 87616984 | 39 | 0 |
| FOXA1 | MCF7 | GSE15244 | 87596244 | 87596691 | 447 | 0 |
| H3K4me2 | HCT116 | GSE10453 | 87596366 | 87596691 | 325 | 0 |
| H3K4me3 | colorectal | cancer | 87596406 | 87596691 | 285 | 0 |
| Myc | K562 | GSE19551 | 87639587 | 87639873 | 286 | 0 |
| Oct1 | Hela | GSE14283 | 87608899 | 87608929 | 30 | 0 |
| Oct1 | Hela | GSE14283 | 87611782 | 87611816 | 34 | 0 |
| Oct1 | Hela | GSE14283 | 87616951 | 87617006 | 55 | 0 |
| Oct1 | Hela | GSE14283 | 87636159 | 87636215 | 56 | 0 |
| Oct4 | hES | GSE17917 | 87595741 | 87596096 | 355 | 0 |
| Oct4 | hES | GSE17917 | 87634293 | 87634443 | 150 | 0 |
| PHF8 | 293T | GSE20725 | 87595590 | 87596469 | 879 | 0 |
| PHF8 | HeLa | GSE20725 | 87595594 | 87596740 | 1146 | 0 |
| RNAII | Tamoxifen-MCF7 | GSE14664 | 87598567 | 87598644 | 77 | 0 |
| TFAP2C | MCF7 | GSE21234 | 87603778 | 87604285 | 507 | 0 |
| hScc1 | Bcell | GSE12603 | 87595499 | 87596144 | 645 | 0 |
| hScc1 | G2 | GSE9613 | 87595499 | 87596282 | 783 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-1 | hsa-mir-1-2 | 18 | 15685193 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 15685193 |
| hsa-miR-124 | hsa-mir-124-1 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-2 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-3 | 20 | 15685193 |
| hsa-miR-373 | hsa-mir-373 | 19 | 15685193 |
| hsa-miR-373* | hsa-mir-373 | 19 | 15685193 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 377 | Unknown | MicroArray | miR-124 | CPNE3 | n_a | 15685193 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000085719 | G1-to-S transition | n_a | n_a | "epithelium, lymphoblast, lymphocyte, muscle cell" | "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma" |
| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25668 | mRNA | CPNE3 | chr8 | 87595787 | 87642842 | 7522 | EST | chr8 | 87635320 | 87660550 | Non-exonic Bidirectional (NOB) pairs | |