AutismKB 2.0

Annotation Detail for USP13


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Basic Information Top
Gene Symbol:USP13 ( ISOT3,IsoT-3 )
Gene Full Name: ubiquitin specific peptidase 13 (isopeptidase T-3)
Band: 3q26.33
Quick LinksEntrez ID:8975; OMIM: 603591; Uniprot ID:UBP13_HUMAN; ENSEMBL ID: ENSG00000058056; HGNC ID: 12611
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
114Phosphoserine.
122Phosphothreonine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
17MethylarginineHMM predict
63Phosphotyrosine(INSR)HMM predict
114Phosphoserine(PKG)HMM predict
122Phosphothreonine(CK2)HMM predict
131SulfotyrosineHMM predict
131Phosphotyrosine(INSR)HMM predict
133SulfotyrosineHMM predict
133Phosphotyrosine(Syk)HMM predict
172Phosphoserine(CDC2)HMM predict
174Phosphotyrosine(Syk)HMM predict
194N-linkedHMM predict
200N-linkedHMM predict
223N-linkedHMM predict
335Phosphotyrosine(INSR)HMM predict
399Phosphotyrosine(Jak)HMM predict
441Phosphoserine(CK1)HMM predict
468N-linkedHMM predict
484S-palmitoylHMM predict
571Phosphothreonine(PKC)HMM predict
854Phosphotyrosine(INSR)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003940
  • Location:chr3 180853634-180984674
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 180850161 180850317 156 3396
CTCF CD4SISSRdata 180850161 180850317 156 3396
CTCF HelaGSE12889 180850123 180850318 195 3414
CTCF JurkatGSE12889 180850085 180850372 287 3406
CTCF G2GSE9613 180849933 180850282 349 3527
CTCF G2GSE9613 180852944 180854315 1371 5
FOXA1 MCF7GSE15244 180849970 180850282 312 3509
RARA MCF7GSE15244 180849933 180850282 349 3527
RARG MCF7GSE15244 180844799 180845020 221 8725
RARG MCF7GSE15244 180849933 180850282 349 3527
hScc1 CdLSGSE12603 180849933 180850282 349 3527
p130 SenescentGSE19898 180853082 180853351 269 418
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 180867193 180867573 380 0
CTCF G2GSE9613 180919588 180919863 275 0
CTCF G2GSE9613 180951644 180952089 445 0
CTCF G2GSE9613 180968465 180968972 507 0
FOXA1 MCF7GSE15244 180856347 180856630 283 0
FOXA1 MCF7GSE15244 180866381 180867010 629 0
FOXA1 MCF7GSE15244 180873305 180874307 1002 0
FOXA1 MCF7GSE15244 180888496 180889165 669 0
Fos K562GSE19551 180961321 180961751 430 0
H3K4me2 HCT116GSE10453 180854829 180855419 590 0
H3ac HepG2E 180853950 180854382 432 0
H3ac HepG2E 180854715 180855993 1278 0
H3ac HepG2E 180856522 180857127 605 0
Myc hESGSE17917 180853615 180853976 361 0
Nanog hESGSE18292 180854708 180855267 559 0
Nanog hESGSE18292 180901738 180902384 646 0
PHF8 HeLaGSE20725 180853128 180854452 1324 0
PHF8 Hs68minusFBSGSE20725 180853711 180854768 1057 0
RARA MCF7GSE15244 180856347 180856666 319 0
RARA MCF7GSE15244 180866381 180866667 286 0
RARA MCF7GSE15244 180873196 180874284 1088 0
RARG MCF7GSE15244 180854715 180855329 614 0
RARG MCF7GSE15244 180856347 180856765 418 0
RARG MCF7GSE15244 180873196 180874307 1111 0
SRF GMOGSE8489 180977590 180977900 310 0
TFAP2C MCF7GSE21234 180853729 180854182 453 0
TFAP2C MCF7GSE21234 180873322 180874361 1039 0
hScc1 BcellGSE12603 180853122 180854315 1193 0
hScc1 CdLSGSE12603 180853215 180854133 918 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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