Annotation Detail for PLOD3
Basic Information Top
| Gene Symbol: | PLOD3 ( LH3 ) |
|---|---|
| Gene Full Name: | procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 |
| Band: | 7q22.1 |
| Quick Links | Entrez ID:8985; OMIM: 603066; Uniprot ID:PLOD3_HUMAN; ENSEMBL ID: ENSG00000106397; HGNC ID: 9083 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 63 | N-linked (GlcNAc...) (Potential). | |
| 548 | N-linked (GlcNAc...) (Potential). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 63 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 548 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 63 | N-linked | HMM predict |
| 100 | Phosphotyrosine(Syk) | HMM predict |
| 268 | Phosphotyrosine(INSR) | HMM predict |
| 367 | Phosphoserine(CDC2) | HMM predict |
| 367 | Phosphoserine(ATM) | HMM predict |
| 402 | Phosphothreonine(PKC) | HMM predict |
| 437 | Phosphotyrosine(Syk) | HMM predict |
| 438 | Phosphotyrosine(Syk) | HMM predict |
| 444 | Phosphotyrosine(INSR) | HMM predict |
| 444 | Phosphotyrosine(EGFR) | HMM predict |
| 686 | Phosphotyrosine(INSR) | HMM predict |
| 702 | Phosphoserine(CDC2) | HMM predict |
| 724 | O-linked | HMM predict |
- RefSeq ID: NM_001084
- Location:chr7 100635978-100647730
- strand:-
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| hScc1 | Bcell | GSE12603 | 100633314 | 100634411 | 1097 | 2116 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 100636234 | 100636919 | 685 | 0 |
| CTCF | G2 | GSE9613 | 100637660 | 100638071 | 411 | 0 |
| CTCF | G2 | GSE9613 | 100638788 | 100638975 | 187 | 0 |
| CTCF | G2 | GSE9613 | 100641773 | 100642176 | 403 | 0 |
| CTCF | G2 | GSE9613 | 100645800 | 100646669 | 869 | 0 |
| H3ac | HepG2 | E | 100645870 | 100647020 | 1150 | 0 |
| PHF8 | HeLa | GSE20725 | 100646626 | 100648089 | 1463 | 0 |
| Rb | Growing | GSE19898 | 100646821 | 100647089 | 268 | 0 |
| Rb | Quiescent | GSE19898 | 100646666 | 100646911 | 245 | 0 |
| Rb | Senescent | GSE19898 | 100646761 | 100647125 | 364 | 0 |
| Rb | Senescent | GSE19898 | 100647238 | 100647753 | 515 | 0 |
| Rb | shRbSenescence | GSE19898 | 100646867 | 100647047 | 180 | 0 |
| Rb | shRbSenescence | GSE19898 | 100647221 | 100647363 | 142 | 0 |
| p130 | Quiescent | GSE19898 | 100647237 | 100647465 | 228 | 0 |
| p130 | Senescent | GSE19898 | 100647219 | 100647499 | 280 | 0 |
| p130 | shRbSenescent | GSE19898 | 100646656 | 100647160 | 504 | 0 |
| p130 | shRbSenescent | GSE19898 | 100647213 | 100647388 | 175 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7a | hsa-let-7a-1 | 9 | 19342589 |
| hsa-let-7a | hsa-let-7a-2 | 11 | 19342589 |
| hsa-let-7a | hsa-let-7a-3 | 22 | 19342589 |
| hsa-let-7a* | hsa-let-7a-1 | 9 | 19342589 |
| hsa-let-7a* | hsa-let-7a-3 | 22 | 19342589 |
| hsa-let-7b | hsa-let-7b | 22 | 19342589 |
| hsa-let-7b* | hsa-let-7b | 22 | 19342589 |
| hsa-let-7c | hsa-let-7c | 21 | 19342589 |
| hsa-let-7c* | hsa-let-7c | 21 | 19342589 |
| hsa-let-7d | hsa-let-7d | 9 | 19342589 |
| hsa-let-7d* | hsa-let-7d | 9 | 19342589 |
| hsa-let-7e | hsa-let-7e | 19 | 19342589 |
| hsa-let-7e* | hsa-let-7e | 19 | 19342589 |
| hsa-let-7f | hsa-let-7f-1 | 9 | 19342589 |
| hsa-let-7f | hsa-let-7f-2 | X | 19342589 |
| hsa-let-7f-1* | hsa-let-7f-1 | 9 | 19342589 |
| hsa-let-7f-2* | hsa-let-7f-2 | X | 19342589 |
| hsa-let-7g | hsa-let-7g | 3 | 19342589 |
| hsa-let-7g* | hsa-let-7g | 3 | 19342589 |
| hsa-let-7i | hsa-let-7i | 12 | 19342589 |
| hsa-let-7i* | hsa-let-7i | 12 | 19342589 |
| hsa-miR-1 | hsa-mir-1-2 | 18 | 15685193 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 15685193 |
| hsa-miR-124 | hsa-mir-124-1 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-2 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-3 | 20 | 15685193 |
| hsa-miR-21 | hsa-mir-21 | 17 | 19342589 |
| hsa-miR-21* | hsa-mir-21 | 17 | 19342589 |
| hsa-miR-373 | hsa-mir-373 | 19 | 15685193 |
| hsa-miR-373* | hsa-mir-373 | 19 | 15685193 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 249 | Unknown | MicroArray | miR-124 | PLOD3 | n_a | 15685193 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000106397 | G1-to-S transition | n_a | n_a | "epithelium, lymphoblast, lymphocyte, leukocyte, macrophage, muscle cell" | "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma" |
Cis-Nats regulation