AutismKB 2.0

Annotation Detail for CCNF


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Basic Information Top
Gene Symbol:CCNF ( FBX1,FBXO1 )
Gene Full Name: cyclin F
Band: 16p13.3
Quick LinksEntrez ID:899; OMIM: 600227; Uniprot ID:CCNF_HUMAN; ENSEMBL ID: ENSG00000162063; HGNC ID: 1591
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
28Nuclear localization signal 1.
574Nuclear localization signal 2.
Location(AA) Modifications Resource
Location(AA) Modification Resource
29N-linkedHMM predict
158Phosphoserine(IKK)HMM predict
162Phosphoserine(IKK)HMM predict
306N-linkedHMM predict
522Phosphotyrosine(EGFR)HMM predict
522Phosphotyrosine(INSR)HMM predict
546Phosphoserine(CDC2)HMM predict
564Phosphoserine(CDC2)HMM predict
570Phosphothreonine(PKC)HMM predict
577Phosphoserine(PKG)HMM predict
584Phosphoserine(IKK)HMM predict
588O-linkedHMM predict
594Phosphoserine(CK2)HMM predict
595Phosphoserine(CK1)HMM predict
595Phosphoserine(ATM)HMM predict
653Phosphoserine(CK2)HMM predict
654Phosphoserine(CK2)HMM predict
654Phosphoserine(CK2)HMM predict
680Phosphothreonine(MAPK)HMM predict
680O-linkedHMM predict
690Phosphoserine(PKG)HMM predict
703O-linkedHMM predict
704O-linkedHMM predict
706O-linkedHMM predict
707O-linkedHMM predict
709Phosphoserine(CDC2)HMM predict
709Phosphoserine(MAPK)HMM predict
711O-linkedHMM predict
726Phosphoserine(IKK)HMM predict
754Phosphoserine(IKK)HMM predict
754PhosphoserineHMM predict
758O-linkedHMM predict
759Phosphoserine(CK1)HMM predict
774Phosphoserine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001761
  • Location:chr16 2419440-2448855
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 2413207 2413389 182 6143
CTCF CD4SISSRdata 2413207 2413389 182 6143
CTCF JurkatGSE12889 2413158 2413442 284 6141
CTCF G2GSE9613 2412811 2413408 597 6331
CTCF G2GSE9613 2414757 2415050 293 4537
CTCF G2GSE9613 2418268 2418483 215 1065
Fos K562GSE19551 2418394 2419589 1195 449
H3K4me3 colorectalcancer 2419179 2419609 430 47
PHF8 HeLaGSE20725 2418475 2420035 1560 186
TFAP2C MCF7GSE21234 2416584 2417379 795 2459
TFAP2C MCF7GSE21234 2417449 2418836 1387 1298
hScc1 BcellGSE12603 2412979 2413408 429 6247
hScc1 CdLSGSE12603 2412979 2413408 429 6247
p130 SenescentGSE19898 2418964 2419467 503 225
p130 shRbSenescentGSE19898 2418626 2419697 1071 279
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 2441980 2442187 207 0
CTCF G2GSE9613 2444215 2444737 522 0
CTCF G2GSE9613 2446573 2446960 387 0
FOXA1 MCF7GSE15244 2419900 2420829 929 0
FoxA1 MCF7MACSdata 2420389 2420580 191 0
H3ac HepG2E 2420084 2421373 1289 0
LIN9 SGSE7516 2419461 2420195 734 0
TFAP2C MCF7GSE21234 2444152 2444935 783 0
hScc1 BcellGSE12603 2420401 2420829 428 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-155 hsa-mir-155 21 19956200
hsa-miR-155* hsa-mir-155 21 19956200
hsa-miR-222 hsa-mir-222 X 19956200
hsa-miR-222* hsa-mir-222 X 19956200
hsa-miR-424 hsa-mir-424 X 19956200
hsa-miR-424* hsa-mir-424 X 19956200
hsa-miR-503 hsa-mir-503 X 19956200
hsa-miR-9 hsa-mir-9-1 1 19956200
hsa-miR-9 hsa-mir-9-2 5 19956200
hsa-miR-9 hsa-mir-9-3 15 19956200
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
9484 mRNA CCNF chr16 2419440 2448856 219 EST chr16 2446307 2449961Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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