AutismKB 2.0

Annotation Detail for KALRN


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Basic Information Top
Gene Symbol:KALRN ( ARHGEF24,DUET,DUO,FLJ12332,FLJ16443,FLJ18196,FLJ18623,HAPIP,TRAD )
Gene Full Name: kalirin, RhoGEF kinase
Band: 3q21.1-q21.2
Quick LinksEntrez ID:8997; OMIM: 604605; Uniprot ID:KALRN_HUMAN; ENSEMBL ID: ENSG00000160145; HGNC ID: 4814
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
1750Phosphoserine.
1753Phosphoserine.
1756Phosphoserine.
1773Phosphoserine.
1799Phosphoserine.
1817Phosphoserine.
2236Phosphoserine.
2261Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001024660
  • Location:chr3 125296274-125922724
  • strand:+
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 125752076 125752289 213 0
CTCF CD4GSE12889 125761333 125761762 429 0
CTCF CD4GSE12889 125766480 125766800 320 0
CTCF CD4SISSRdata 125752076 125752289 213 0
CTCF CD4SISSRdata 125761333 125761762 429 0
CTCF CD4SISSRdata 125766480 125766800 320 0
CTCF HelaGSE12889 125766559 125766753 194 0
CTCF JurkatGSE12889 125751961 125752225 264 0
CTCF G2GSE9613 125751935 125752213 278 0
CTCF G2GSE9613 125752564 125753337 773 0
CTCF G2GSE9613 125760697 125762117 1420 0
CTCF G2GSE9613 125766381 125767148 767 0
CTCF G2GSE9613 125771491 125771644 153 0
CTCF G2GSE9613 125776264 125776552 288 0
CTCF G2GSE9613 125785996 125786304 308 0
ER Fulvestrant-MCF7GSE14664 125753610 125753654 44 0
FOXA1 MCF7GSE15244 125722253 125723313 1060 0
FOXA1 MCF7GSE15244 125752768 125754258 1490 0
FOXA1 MCF7GSE15244 125760779 125761476 697 0
FOXA1 MCF7GSE15244 125785741 125786043 302 0
Fos K562GSE19551 125781246 125781609 363 0
FoxA1 MCF7MACSdata 125753963 125754178 215 0
Myc K562GSE19551 125751967 125752254 287 0
Nanog hESGSE18292 125737357 125737666 309 0
Oct1 HelaGSE14283 125767586 125767655 69 0
Oct1 HelaGSE14283 125770122 125770157 35 0
RARA MCF7GSE15244 125753362 125754258 896 0
RARG MCF7GSE15244 125752768 125754258 1490 0
RARG MCF7GSE15244 125785741 125785957 216 0
RNAII Tamoxifen-MCF7GSE14664 125753609 125753645 36 0
Rb QuiescentGSE19898 125785910 125786043 133 0
STAT1 HeLaGSE12783 125753596 125755464 1868 0
hScc1 BcellGSE12603 125751899 125752213 314 0
hScc1 BcellGSE12603 125766381 125767269 888 0
hScc1 CdLSGSE12603 125751514 125752213 699 0
hScc1 CdLSGSE12603 125761333 125761791 458 0
hScc1 CdLSGSE12603 125766381 125767305 924 0
hScc1 G2GSE9613 125751296 125752213 917 0
hScc1 G2GSE9613 125760732 125761791 1059 0
hScc1 G2GSE9613 125766381 125767305 924 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
18608 mRNA KALRN chr3 125786241 125922352 118 EST chr3 125899664 125901690Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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