AutismKB 2.0

Annotation Detail for TAF1C


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Basic Information Top
Gene Symbol:TAF1C ( MGC:39976,SL1,TAFI110,TAFI95 )
Gene Full Name: TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa
Band: 16q24
Quick LinksEntrez ID:9013; OMIM: 604905; Uniprot ID:TAF1C_HUMAN; ENSEMBL ID: ENSG00000103168; HGNC ID: 11534
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
834Phosphothreonine.
848Phosphoserine.
858Phosphoserine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
62Phosphothreonine(MAPK)HMM predict
139Phosphothreonine(PKC)HMM predict
143Phosphothreonine(PKC)HMM predict
175Phosphoserine(CK1)HMM predict
175Phosphoserine(PKA)HMM predict
175Phosphoserine(PKG)HMM predict
297Phosphothreonine(MAPK)HMM predict
374Phosphotyrosine(Syk)HMM predict
401Phosphothreonine(PKC)HMM predict
486Phosphoserine(MAPK)HMM predict
577O-linkedHMM predict
580Phosphothreonine(MAPK)HMM predict
747Phosphothreonine(PKC)HMM predict
754Phosphothreonine(PKA)HMM predict
761Phosphoserine(CK1)HMM predict
763Phosphoserine(ATM)HMM predict
773Phosphoserine(CK1)HMM predict
774Phosphoserine(IKK)HMM predict
774Phosphoserine(ATM)HMM predict
774Phosphoserine(CDK)HMM predict
777Phosphoserine(MAPK)HMM predict
777Phosphoserine(ATM)HMM predict
777Phosphoserine(IKK)HMM predict
791O-linkedHMM predict
792Phosphothreonine(CDC2)HMM predict
799Phosphothreonine(MAPK)HMM predict
828Phosphothreonine(PKA)HMM predict
834O-linkedHMM predict
834Phosphothreonine(CDK)HMM predict
834Phosphothreonine(MAPK)HMM predict
834Phosphothreonine(CDC2)HMM predict
838Phosphoserine(ATM)HMM predict
838Phosphoserine(IKK)HMM predict
838O-linkedHMM predict
848Phosphoserine(ATM)HMM predict
852O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_139353
  • Location:chr16 82768962-82778162
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 82778112 82778336 224 62
CTCF CD4SISSRdata 82778112 82778336 224 62
CTCF JurkatGSE12889 82778101 82778329 228 53
Myc K562GSE19551 82777879 82778536 657 45
Rb SenescentGSE19898 82778160 82778448 288 142
hScc1 CdLSGSE12603 82778065 82778524 459 132
p130 QuiescentGSE19898 82778337 82778531 194 272
p130 SenescentGSE19898 82778031 82778427 396 67
p130 SenescentGSE19898 82778549 82778695 146 460
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 82769588 82769910 322 0
CTCF G2GSE9613 82770558 82770999 441 0
CTCF G2GSE9613 82774366 82774884 518 0
CTCF G2GSE9613 82777689 82778524 835 0
ETS1 JurkatGSE17954 82777526 82778593 1067 0
GABP k562GSE8489 82773989 82776675 2686 0
GABP k562GSE8489 82777689 82778524 835 0
Oct1 HelaGSE14283 82775064 82775126 62 0
PHF8 HeLaGSE20725 82777602 82778356 754 0
RARA MCF7GSE15244 82768737 82769481 744 0
Rb SenescentGSE19898 82777670 82778028 358 0
TFAP2C MCF7GSE21234 82770223 82771170 947 0
USF1 HepG2E 82768777 82769444 667 0
hScc1 BcellGSE12603 82774884 82775412 528 0
hScc1 BcellGSE12603 82777689 82778524 835 0
p130 shRbSenescentGSE19898 82777708 82778215 507 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 15337850
hsa-let-7a hsa-let-7a-2 11 15337850
hsa-let-7a hsa-let-7a-3 22 15337850
hsa-let-7a* hsa-let-7a-1 9 15337850
hsa-let-7a* hsa-let-7a-3 22 15337850
hsa-let-7b hsa-let-7b 22 15337850
hsa-let-7b* hsa-let-7b 22 15337850
hsa-let-7c hsa-let-7c 21 15337850
hsa-let-7c* hsa-let-7c 21 15337850
hsa-let-7d hsa-let-7d 9 15337850
hsa-let-7d* hsa-let-7d 9 15337850
hsa-let-7e hsa-let-7e 19 15337850
hsa-let-7e* hsa-let-7e 19 15337850
hsa-let-7f hsa-let-7f-1 9 15337850
hsa-let-7f hsa-let-7f-2 X 15337850
hsa-let-7f-1* hsa-let-7f-1 9 15337850
hsa-let-7f-2* hsa-let-7f-2 X 15337850
hsa-let-7g hsa-let-7g 3 15337850
hsa-let-7g* hsa-let-7g 3 15337850
hsa-let-7i hsa-let-7i 12 15337850
hsa-let-7i* hsa-let-7i 12 15337850
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
10309 mRNA LOC161931 chr16 82777638 82788273 156 mRNA TAF1C chr16 82768961 82778163Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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