AutismKB 2.0

Annotation Detail for TSPAN18


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Basic Information Top
Gene Symbol:TSPAN18 ( FLJ14609,TSPAN )
Gene Full Name: tetraspanin 18
Band: 11p11.2
Quick LinksEntrez ID:90139; OMIM: NA; Uniprot ID:TSN18_HUMAN; ENSEMBL ID: ENSG00000157570; HGNC ID: 20660
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
111N-linked (GlcNAc...) (Potential).
129N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
111N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
129N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
73S-palmitoylHMM predict
74S-palmitoylHMM predict
111N-linkedHMM predict
129N-linkedHMM predict
147S-palmitoylHMM predict
148S-palmitoylHMM predict
166Phosphothreonine(PKC)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_130783
  • Location:chr11 44838452-44909451
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Myc hESGSE17917 44837631 44837979 348 648
NRSF pAbJurkat 44836770 44837106 336 1515
p130 shRbQuiescentGSE19898 44820089 44820858 769 17979
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 44839817 44841659 1842 0
CTCF CD4GSE12889 44872369 44872556 187 0
CTCF CD4SISSRdata 44872369 44872556 187 0
CTCF HelaGSE12889 44872174 44872711 537 0
CTCF JurkatGSE12889 44872336 44872588 252 0
ER Fulvestrant-MCF7GSE14664 44840766 44840802 36 0
ER Fulvestrant-MCF7GSE14664 44848771 44848846 75 0
Fos K562GSE19551 44878094 44878550 456 0
NRSF pAbJurkat 44854115 44854366 251 0
NRSF pAbJurkat 44862134 44862343 209 0
NRSF pAbJurkat 44870030 44870346 316 0
Oct1 HelaGSE14283 44840772 44840804 32 0
P300 T0-glioblastomaGSE21026 44839990 44840848 858 0
P300 T30-glioblastomaGSE21026 44839604 44841357 1753 0
Rb GrowingGSE19898 44864430 44864606 176 0
Rb GrowingGSE19898 44872397 44872544 147 0
hScc1 BcellGSE12603 44858244 44858456 212 0
hScc1 CdLSGSE12603 44872153 44872989 836 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
4350 mRNA TSPAN18 chr11 44838452 44909459 174 mRNA TSPAN18 chr11 44895866 44897611Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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