AutismKB 2.0

Annotation Detail for SEMA5A


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Basic Information Top
Gene Symbol:SEMA5A ( FLJ12815,SEMAF,semF )
Gene Full Name: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
Band: 5p15.31
Quick LinksEntrez ID:9037; OMIM: 609297; Uniprot ID:SEM5A_HUMAN; ENSEMBL ID: ENSG00000112902; HGNC ID: 10736
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
106Phosphoserine.
142N-linked (GlcNAc...) (Potential).
168N-linked (GlcNAc...) (Potential).
227N-linked (GlcNAc...) (Potential).
277N-linked (GlcNAc...) (Potential).
323N-linked (GlcNAc...) (Potential).
367N-linked (GlcNAc...) (Potential).
437N-linked (GlcNAc...) (Potential).
536N-linked (GlcNAc...) (Potential).
591N-linked (GlcNAc...) (Potential).
717N-linked (GlcNAc...) (Potential).
933N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
106Phosphoserine.Swiss-Prot 53.0
106PhosphoserinePhospho.ELM 6.0
142N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
168N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
227N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
277N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
323N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
367N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
437N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
536N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
591N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
717N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
933N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
59Phosphoserine(ATM)HMM predict
142N-linkedHMM predict
147N-linkedHMM predict
164Phosphoserine(CDC2)HMM predict
168N-linkedHMM predict
227N-linkedHMM predict
277N-linkedHMM predict
367N-linkedHMM predict
372N-linkedHMM predict
437N-linkedHMM predict
467Phosphoserine(ATM)HMM predict
494Phosphoserine(PKB)HMM predict
495Phosphothreonine(PKA)HMM predict
515Phosphoserine(CK1)HMM predict
515Phosphoserine(IKK)HMM predict
521Phosphoserine(CK1)HMM predict
536N-linkedHMM predict
546C-linkedHMM predict
549C-linkedHMM predict
572Phosphoserine(CDC2)HMM predict
572Phosphoserine(IKK)HMM predict
598C-linkedHMM predict
601C-linkedHMM predict
604C-linkedHMM predict
605Phosphoserine(IKK)HMM predict
609O-linkedHMM predict
623Phosphoserine(ATM)HMM predict
624N-linkedHMM predict
656C-linkedHMM predict
659C-linkedHMM predict
662C-linkedHMM predict
708Phosphothreonine(CDC2)HMM predict
710C-linkedHMM predict
713C-linkedHMM predict
761Phosphoserine(IKK)HMM predict
787C-linkedHMM predict
790C-linkedHMM predict
793C-linkedHMM predict
818Phosphotyrosine(SRC)HMM predict
844C-linkedHMM predict
847C-linkedHMM predict
850C-linkedHMM predict
867Phosphoserine(IKK)HMM predict
902C-linkedHMM predict
905C-linkedHMM predict
933N-linkedHMM predict
955Phosphoserine(PKG)HMM predict
957Phosphoserine(CK1)HMM predict
957Phosphoserine(PKB)HMM predict
1010O-linkedHMM predict
1015N-linkedHMM predict
1016O-linkedHMM predict
1020N-linkedHMM predict
1028Phosphotyrosine(INSR)HMM predict
1030PhosphoserineHMM predict
1050Phosphotyrosine(INSR)HMM predict
1060Phosphotyrosine(INSR)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003966
  • Location:chr5 9091858-9599157
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 9599090 9599406 316 91
CTCF G2GSE9613 9602728 9603163 435 3788
FoxA1 MCF7MACSdata 9613139 9613448 309 14136
P300 T30-glioblastomaGSE21026 9615095 9615861 766 16321
TFAP2C MCF7GSE21234 9611481 9612220 739 12693
p130 shRbQuiescentGSE19898 9600361 9601376 1015 1711
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Nanog hESGSE18292 9091442 9091934 492 171
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 9184699 9184939 240 0
CBP T30-glioblastomaGSE21026 9184708 9185029 321 0
CBP T30-glioblastomaGSE21026 9240992 9241932 940 0
CBP T30-glioblastomaGSE21026 9576367 9576991 624 0
CTCF CD4GSE12889 9414882 9415201 319 0
CTCF CD4SISSRdata 9414882 9415201 319 0
CTCF G2GSE9613 9099411 9099712 301 0
CTCF G2GSE9613 9101054 9101266 212 0
CTCF G2GSE9613 9157838 9157971 133 0
CTCF G2GSE9613 9163397 9163719 322 0
CTCF G2GSE9613 9171993 9172237 244 0
CTCF G2GSE9613 9175798 9176057 259 0
CTCF G2GSE9613 9209271 9209817 546 0
CTCF G2GSE9613 9210518 9210837 319 0
CTCF G2GSE9613 9241984 9242355 371 0
CTCF G2GSE9613 9249783 9250293 510 0
CTCF G2GSE9613 9261435 9261950 515 0
CTCF G2GSE9613 9366853 9367100 247 0
CTCF G2GSE9613 9388047 9388506 459 0
CTCF G2GSE9613 9392302 9392651 349 0
CTCF G2GSE9613 9414556 9415435 879 0
CTCF G2GSE9613 9492044 9492193 149 0
CTCF G2GSE9613 9494615 9494935 320 0
CTCF G2GSE9613 9496869 9497014 145 0
CTCF G2GSE9613 9514646 9514795 149 0
CTCF G2GSE9613 9526651 9527005 354 0
CTCF G2GSE9613 9551783 9552549 766 0
CTCF G2GSE9613 9569108 9569497 389 0
CTCF G2GSE9613 9582370 9582564 194 0
CTCF G2GSE9613 9597425 9598756 1331 0
ER E2-MCF7GSE14664 9433714 9433803 89 0
ER E2-MCF7GSE14664 9447780 9447833 53 0
ER E2-MCF7GSE14664 9483835 9483872 37 0
ER Fulvestrant-MCF7GSE14664 9132964 9132997 33 0
ER Fulvestrant-MCF7GSE14664 9267195 9267250 55 0
ER Fulvestrant-MCF7GSE14664 9483836 9483872 36 0
FOXA1 MCF7GSE15244 9576395 9576924 529 0
FoxA1 MCF7MACSdata 9401818 9402043 225 0
FoxA1 MCF7MACSdata 9576681 9577039 358 0
Myc K562GSE19551 9597613 9597859 246 0
NRSF JurkatGSE13047 9251425 9251938 513 0
NRSF JurkatSISSRdata 9552140 9552261 121 0
NRSF mAbJurkat 9249929 9251923 1994 0
NRSF mAbJurkat 9252496 9253146 650 0
NRSF-mono JurkatQuESTdata 9251463 9251926 463 0
NRSF-mono JurkatQuESTdata 9297448 9297965 517 0
NRSF pAbJurkat 9245010 9245301 291 0
NRSF-poly JurkatQuESTdata 9251451 9251831 380 0
NRSF-poly JurkatQuESTdata 9297468 9297991 523 0
Nanog hESGSE18292 9509654 9510179 525 0
Oct1 H2O2-HelaGSE14283 9225851 9225882 31 0
Oct1 H2O2-HelaGSE14283 9248559 9248588 29 0
Oct1 H2O2-HelaGSE14283 9266654 9266680 26 0
Oct1 H2O2-HelaGSE14283 9301223 9301276 53 0
Oct1 H2O2-HelaGSE14283 9309661 9309689 28 0
Oct1 H2O2-HelaGSE14283 9483841 9483871 30 0
Oct1 H2O2-HelaGSE14283 9507863 9507893 30 0
Oct1 H2O2-HelaGSE14283 9539606 9539635 29 0
Oct1 H2O2-HelaGSE14283 9546101 9546149 48 0
Oct1 HelaGSE14283 9108824 9108855 31 0
Oct1 HelaGSE14283 9132960 9133000 40 0
Oct1 HelaGSE14283 9148863 9148894 31 0
Oct1 HelaGSE14283 9178703 9178755 52 0
Oct1 HelaGSE14283 9223055 9223101 46 0
Oct1 HelaGSE14283 9225850 9225883 33 0
Oct1 HelaGSE14283 9239674 9239702 28 0
Oct1 HelaGSE14283 9243789 9243851 62 0
Oct1 HelaGSE14283 9248559 9248596 37 0
Oct1 HelaGSE14283 9301212 9301276 64 0
Oct1 HelaGSE14283 9326056 9326091 35 0
Oct1 HelaGSE14283 9483841 9483871 30 0
Oct1 HelaGSE14283 9507863 9507893 30 0
Oct1 HelaGSE14283 9546101 9546149 48 0
Oct4 hESGSE17917 9275510 9276004 494 0
Oct4 hESGSE17917 9414915 9415191 276 0
Oct4 hESGSE21916 9275215 9275967 752 0
Oct4 hESGSE21916 9418647 9419110 463 0
P300 T0-glioblastomaGSE21026 9184722 9184941 219 0
P300 T0-glioblastomaGSE21026 9508945 9510445 1500 0
P300 T30-glioblastomaGSE21026 9240790 9242009 1219 0
P300 T30-glioblastomaGSE21026 9576232 9577496 1264 0
RARA MCF7GSE15244 9576252 9576924 672 0
Rb GrowingGSE19898 9597573 9598014 441 0
Rb QuiescentGSE19898 9597583 9598131 548 0
Rb SenescentGSE19898 9597526 9598240 714 0
Stat6 IL-4-hr4GSE17850 9559697 9560206 509 0
TAF HelaGSE8489 9461444 9462011 567 0
TFAP2C MCF7GSE21234 9318471 9319392 921 0
TFAP2C MCF7GSE21234 9366793 9367270 477 0
TFAP2C MCF7GSE21234 9401399 9401709 310 0
TFAP2C MCF7GSE21234 9551666 9552067 401 0
hScc1 BcellGSE12603 9414856 9415264 408 0
hScc1 BcellGSE12603 9597234 9597966 732 0
hScc1 CdLSGSE12603 9209271 9209817 546 0
hScc1 CdLSGSE12603 9414517 9415889 1372 0
hScc1 CdLSGSE12603 9552039 9552513 474 0
hScc1 CdLSGSE12603 9597234 9598257 1023 0
hScc1 G2GSE9613 9209196 9210837 1641 0
hScc1 G2GSE9613 9261243 9261950 707 0
hScc1 G2GSE9613 9414594 9415435 841 0
hScc1 G2GSE9613 9551598 9552583 985 0
p130 QuiescentGSE19898 9597743 9598086 343 0
p130 SenescentGSE19898 9308368 9308543 175 0
p130 SenescentGSE19898 9492678 9492982 304 0
p130 shRbQuiescentGSE19898 9412440 9412921 481 0
p130 shRbSenescentGSE19898 9597654 9598162 508 0
p63 keratinocytesGSE17611 9165425 9166344 919 0
p63 keratinocytesGSE17611 9520403 9521550 1147 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
20688 EST chr5 9054887 9099052 385 mRNA SEMA5A chr5 9091858 9599158Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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