Annotation Detail for CLDN1
Basic Information Top
| Gene Symbol: | CLDN1 ( CLD1,ILVASC,SEMP1 ) |
|---|---|
| Gene Full Name: | claudin 1 |
| Band: | 3q28 |
| Quick Links | Entrez ID:9076; OMIM: 603718; Uniprot ID:CLD1_HUMAN; ENSEMBL ID: ENSG00000163347; HGNC ID: 2032 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 205 | Phosphoserine (By similarity). | |
| 206 | Phosphoserine (By similarity). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 205 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
| 206 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 56 | Phosphoserine(IKK) | HMM predict |
| 72 | N-linked | HMM predict |
| 149 | Phosphotyrosine(Syk) | HMM predict |
| 183 | S-palmitoyl | HMM predict |
| 184 | S-palmitoyl | HMM predict |
| 186 | S-palmitoyl | HMM predict |
| 195 | O-linked | HMM predict |
| 195 | O-linked | HMM predict |
| 195 | O-linked | HMM predict |
| 199 | Tyrosine | HMM predict |
- RefSeq ID: NM_021101
- Location:chr3 191506196-191522908
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 191522491 | 191523916 | 1425 | 295 |
| CTCF | G2 | GSE9613 | 191537721 | 191537937 | 216 | 14921 |
| hScc1 | Bcell | GSE12603 | 191522795 | 191523120 | 325 | 49 |
| hScc1 | CdLS | GSE12603 | 191522713 | 191523410 | 697 | 153 |
| hScc1 | G2 | GSE9613 | 191522517 | 191523815 | 1298 | 258 |
| p63 | keratinocytes | GSE17611 | 191526384 | 191527125 | 741 | 3846 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| FOXA1 | MCF7 | GSE15244 | 191497341 | 191497590 | 249 | 8731 |
| NFkBII | GM12892 | GSE19485 | 191490147 | 191491324 | 1177 | 15461 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 191519253 | 191519415 | 162 | 0 |
| FOXA1 | MCF7 | GSE15244 | 191506942 | 191508289 | 1347 | 0 |
| H3ac | HepG2 | E | 191518415 | 191522344 | 3929 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7b | hsa-let-7b | 22 | 18668040 |
| hsa-let-7b* | hsa-let-7b | 22 | 18668040 |
| hsa-miR-1 | hsa-mir-1-2 | 18 | 18668040 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 18668040 |
| hsa-miR-155 | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-155* | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-16 | hsa-mir-16-1 | 13 | 18668040 |
| hsa-miR-16 | hsa-mir-16-2 | 3 | 18668040 |
| hsa-miR-30a | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30a* | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30b | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30b* | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-1* | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-2* | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30d | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30d* | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30e | hsa-mir-30e | 1 | 18668040 |
| hsa-miR-30e* | hsa-mir-30e | 1 | 18668040 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 948 | Unknown | pSILAC | miR-155 | CLDN1 | down 50-25% | 18668040 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000163347 | n_a | n_a | n_a | "epithelium, lymphocyte, muscle cell" | "benign tumour, malignant tumour, carcinoma, leukaemia" |
Cis-Nats regulation