Annotation Detail for SPSB3

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Basic Information Top

Gene Symbol:	SPSB3 ( C16orf31,SSB3 )
Gene Full Name:	splA/ryanodine receptor domain and SOCS box containing 3
Band:	16p13.3
Quick Links	Entrez ID:90864; OMIM: 611659; Uniprot ID:SPSB3_HUMAN; ENSEMBL ID: ENSG00000162032; HGNC ID: 30629
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:18 results

No data

Location(AA)	Modification	Resource
44	Phosphoserine(CK2)	HMM predict
46	Phosphoserine(CK1)	HMM predict
48	Phosphoserine(CK1)	HMM predict
48	Phosphoserine(CK2)	HMM predict
52	Sulfotyrosine	HMM predict
53	O-linked	HMM predict
58	O-linked	HMM predict
61	O-linked	HMM predict
80	Phosphoserine(IKK)	HMM predict
102	Sulfotyrosine	HMM predict
111	N-linked	HMM predict
160	Phosphotyrosine(Abl)	HMM predict
192	Phosphoserine(IKK)	HMM predict
276	O-linked	HMM predict
281	S-palmitoyl	HMM predict
282	S-palmitoyl	HMM predict
335	O-linked	HMM predict
352	Cysteine	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_080861
Location:chr16 1766714-1772581
strand:-

Upstream the gene:1 results
Downstream the gene:0 results
Inside the gene:6 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
PHF8	HeLa	GSE20725	1771642	1773569	1927	24

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	1765971	1767878	1907	0
CTCF	G2	GSE9613	1768387	1768973	586	0
CTCF	G2	GSE9613	1769631	1770320	689	0
CTCF	G2	GSE9613	1771153	1772655	1502	0
TFAP2C	MCF7	GSE21234	1768819	1769322	503	0
hScc1	Bcell	GSE12603	1771509	1772619	1110	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
9456	HTC		chr16	1765315	1771226	818	mRNA	SSB3	chr16	1766714	1772582	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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