AutismKB 2.0

Annotation Detail for SLC39A13


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Basic Information Top
Gene Symbol:SLC39A13 ( FLJ25785 )
Gene Full Name: solute carrier family 39 (zinc transporter), member 13
Band: 11p11.2
Quick LinksEntrez ID:91252; OMIM: 608735; Uniprot ID:S39AD_HUMAN; ENSEMBL ID: ENSG00000165915; HGNC ID: 20859
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
262XEXPHE-motif.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_152264
  • Location:chr11 47386757-47394621
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 47386010 47386934 924 286
GABP k562GSE8489 47385081 47386244 1163 1095
H3ac HepG2E 47385319 47385966 647 1115
Myc hESGSE17917 47386241 47386758 517 258
NRSF pAbJurkat 47375172 47375520 348 11412
NRSF pAbJurkat 47378292 47378851 559 8186
PHF8 293TGSE20725 47385870 47387273 1403 186
VDR GM10855-UnstimGSE22484 47385630 47387123 1493 381
hScc1 BcellGSE12603 47375310 47375520 210 11343
hScc1 BcellGSE12603 47377924 47378751 827 8420
hScc1 BcellGSE12603 47385966 47387044 1078 253
hScc1 CdLSGSE12603 47385526 47387044 1518 473
hScc1 G2GSE9613 47386070 47386894 824 276
p130 shRbSenescentGSE19898 47378601 47378779 178 8068
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 47390379 47390656 277 0
CTCF CD4SISSRdata 47390379 47390656 277 0
H3ac HepG2E 47388503 47388946 443 0
NRSF pAbJurkat 47389857 47390628 771 0
NRSF pAbJurkat 47392985 47393319 334 0
NRSF pAbJurkat 47393734 47394178 444 0
P300 T0-glioblastomaGSE21026 47394061 47394942 881 0
P300 T30-glioblastomaGSE21026 47393908 47394990 1082 0
PHF8 Hs68plusFBSGSE20725 47385744 47387897 2153 0
TFAP2C MCF7GSE21234 47387113 47388199 1086 0
hScc1 BcellGSE12603 47389993 47390772 779 0
hScc1 BcellGSE12603 47391433 47392493 1060 0
hScc1 CdLSGSE12603 47390388 47390703 315 0
p130 shRbQuiescentGSE19898 47386829 47387352 523 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
4398 mRNA SLC39A13 chr11 47333576 47394620 71 mRNA SPI1 chr11 47332987 47356674Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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