AutismKB 2.0

Annotation Detail for SYNGR3


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Basic Information Top
Gene Symbol:SYNGR3 ( MGC:20003 )
Gene Full Name: synaptogyrin 3
Band: 16p13.3
Quick LinksEntrez ID:9143; OMIM: 603927; Uniprot ID:SNG3_HUMAN; ENSEMBL ID: ENSG00000127561; HGNC ID: 11501
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
26Phosphothreonine(PKC)HMM predict
140O-linkedHMM predict
208Phosphotyrosine(Syk)HMM predict
208Phosphotyrosine(SRC)HMM predict
208Phosphotyrosine(EGFR)HMM predict
210Phosphoserine(CDC2)HMM predict
210O-linkedHMM predict
216O-linkedHMM predict
224Phosphotyrosine(INSR)HMM predict
224Phosphotyrosine(Syk)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004209
  • Location:chr16 1979968-1984275
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 1979745 1980175 430 9
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 1982849 1983215 366 0
CTCF G2GSE9613 1983739 1983916 177 0
Myc hESGSE17917 1982410 1982628 218 0
NFkBII GM15510GSE19485 1980651 1982771 2120 0
VDR GM10855-stimGSE22484 1980150 1982925 2775 0
VDR GM10861-stimGSE22484 1980220 1982866 2646 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018