AutismKB 2.0

Annotation Detail for CTDP1


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Basic Information Top
Gene Symbol:CTDP1 ( CCFDN,FCP1 )
Gene Full Name: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
Band: 18q23
Quick LinksEntrez ID:9150; OMIM: 604927; Uniprot ID:CTDP1_HUMAN; ENSEMBL ID: ENSG00000060069; HGNC ID: 2498
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
674Phosphoserine.
740Phosphoserine.
780N6-acetyllysine.
869Phosphoserine.
872Phosphoserine.
Location(AA) Modifications Resource
575Phosphoserine (CK2
674Phosphoserine.Swiss-Prot 53.0
740Phosphoserine.Swiss-Prot 53.0
740Phosphoserine (CK2
869Phosphoserine.Swiss-Prot 53.0
869PhosphoserinePhospho.ELM 6.0
872Phosphoserine.Swiss-Prot 53.0
872PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
57O-linkedHMM predict
340Phosphothreonine(PKC)HMM predict
353O-linkedHMM predict
385N-linkedHMM predict
387O-linkedHMM predict
391Phosphothreonine(MAPK)HMM predict
395PhosphoserineHMM predict
416Phosphoserine(ATM)HMM predict
455Phosphoserine(CK2)HMM predict
458Phosphoserine(IKK)HMM predict
460Phosphoserine(IKK)HMM predict
461Phosphoserine(CK1)HMM predict
461Phosphoserine(CK2)HMM predict
462Phosphoserine(CK1)HMM predict
472O-linkedHMM predict
474Phosphoserine(ATM)HMM predict
556Phosphothreonine(CK2)HMM predict
558Phosphoserine(ATM)HMM predict
561Phosphoserine(CK1)HMM predict
575Phosphoserine(CK2)HMM predict
584Phosphothreonine(CK2)HMM predict
605Phosphotyrosine(Syk)HMM predict
674Phosphoserine(MAPK)HMM predict
674Phosphoserine(CDC2)HMM predict
691Phosphothreonine(PKC)HMM predict
832Phosphoserine(PKC)HMM predict
839PhosphoserineHMM predict
839Phosphoserine(PKB)HMM predict
839Phosphoserine(IKK)HMM predict
872Phosphoserine(ATM)HMM predict
874Phosphoserine(CK1)HMM predict
890MethyllysineHMM predict
905O-linkedHMM predict
929Phosphoserine(CK2)HMM predict
932Phosphoserine(CK1)HMM predict
935Phosphoserine(CK1)HMM predict
935Phosphoserine(CK2)HMM predict
936Phosphoserine(PKB)HMM predict
936Phosphoserine(CK1)HMM predict
936Phosphoserine(CK2)HMM predict
942Phosphoserine(CK1)HMM predict
942Phosphoserine(CK2)HMM predict
944Phosphoserine(CK2)HMM predict
944Phosphoserine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_048368
  • Location:chr18 75540788-75615495
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 75540049 75540278 229 625
ETS1 JurkatGSE17954 75539586 75541577 1991 207
H3ac HepG2E 75538623 75539115 492 1920
HIF1 HypoHepG2 75540126 75540817 691 317
PHF8 HeLaGSE20725 75539546 75541277 1731 377
VDR GM10861-UnstimGSE22484 75539039 75541180 2141 679
VDR GM10861-stimGSE22484 75539482 75541364 1882 366
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 75632538 75632690 152 17119
CTCF G2GSE9613 75633269 75633769 500 18024
hScc1 BcellGSE12603 75625511 75626493 982 10507
hScc1 BcellGSE12603 75632538 75633692 1154 17620
hScc1 BcellGSE12603 75635230 75635406 176 19823
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 75555390 75556221 831 0
CTCF G2GSE9613 75540984 75541314 330 0
CTCF G2GSE9613 75587829 75588047 218 0
CTCF G2GSE9613 75613166 75614261 1095 0
ER E2-MCF7GSE14664 75560591 75560694 103 0
ER E2-MCF7GSE14664 75592168 75592200 32 0
FoxA1 MCF7MACSdata 75573541 75573647 106 0
GABP HelaGSE8489 75580439 75581641 1202 0
GABP k562GSE8489 75580505 75581678 1173 0
H3K4me3 colorectalcancer 75541500 75541807 307 0
H3ac HepG2E 75541500 75543488 1988 0
KLF4 hESGSE17917 75559179 75559475 296 0
Oct1 H2O2-HelaGSE14283 75586626 75586656 30 0
Oct1 HelaGSE14283 75564926 75564956 30 0
Oct1 HelaGSE14283 75565943 75565990 47 0
Oct1 HelaGSE14283 75583272 75583367 95 0
Oct1 HelaGSE14283 75586625 75586657 32 0
Oct1 HelaGSE14283 75592154 75592206 52 0
RARA MCF7GSE15244 75592817 75593834 1017 0
RARA MCF7GSE15244 75613098 75614261 1163 0
Rb GrowingGSE19898 75547553 75547732 179 0
TAF HelaGSE8489 75587713 75588011 298 0
TFAP2C MCF7GSE21234 75573425 75573916 491 0
hScc1 BcellGSE12603 75540532 75541161 629 0
hScc1 BcellGSE12603 75574838 75575105 267 0
hScc1 BcellGSE12603 75575434 75575861 427 0
hScc1 BcellGSE12603 75578424 75579457 1033 0
hScc1 BcellGSE12603 75587713 75588047 334 0
hScc1 BcellGSE12603 75594496 75594845 349 0
hScc1 BcellGSE12603 75608065 75608723 658 0
hScc1 BcellGSE12603 75610361 75611006 645 0
hScc1 BcellGSE12603 75613774 75614047 273 0
hScc1 BcellGSE12603 75615015 75615446 431 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
12376 mRNA CTDP1 chr18 75540852 75615495 924 EST chr18 75563715 75564639 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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