AutismKB 2.0

Annotation Detail for YTHDC1


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Basic Information Top
Gene Symbol:YTHDC1 ( KIAA1966,YT521,YT521-B )
Gene Full Name: YTH domain containing 1
Band: 4q13.2
Quick LinksEntrez ID:91746; OMIM: NA; Uniprot ID:YTDC1_HUMAN; ENSEMBL ID: ENSG00000083896; HGNC ID: 30626
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
118Phosphoserine.
146Phosphoserine.
148Phosphothreonine.
275Phosphoserine.
308Phosphoserine.
315Phosphoserine.
317Phosphoserine.
318Phosphoserine.
320Phosphoserine.
322Phosphoserine.
323Phosphotyrosine.
326Phosphoserine.
424Phosphoserine.
515Phosphoserine.
545Phosphoserine.
577Phosphoserine.
Location(AA) Modifications Resource
146Phosphoserine.Swiss-Prot 53.0
146PhosphoserinePhospho.ELM 6.0
148PhosphothreoninePhospho.ELM 6.0
148Phosphothreonine.Swiss-Prot 53.0
275PhosphoserinePhospho.ELM 6.0
275Phosphoserine.Swiss-Prot 53.0
308PhosphoserinePhospho.ELM 6.0
308Phosphoserine.Swiss-Prot 53.0
315PhosphoserinePhospho.ELM 6.0
315Phosphoserine.Swiss-Prot 53.0
317PhosphoserinePhospho.ELM 6.0
317Phosphoserine.Swiss-Prot 53.0
318PhosphoserinePhospho.ELM 6.0
318Phosphoserine.Swiss-Prot 53.0
320PhosphoserinePhospho.ELM 6.0
320Phosphoserine.Swiss-Prot 53.0
322Phosphoserine.Swiss-Prot 53.0
322PhosphoserinePhospho.ELM 6.0
323Phosphotyrosine.Swiss-Prot 53.0
326Phosphoserine.Swiss-Prot 53.0
326PhosphoserinePhospho.ELM 6.0
424PhosphoserinePhospho.ELM 6.0
515Phosphoserine.Swiss-Prot 53.0
515PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
31Phosphotyrosine(Syk)HMM predict
31Phosphotyrosine(INSR)HMM predict
77Phosphoserine(IKK)HMM predict
95Phosphotyrosine(INSR)HMM predict
100Phosphotyrosine(EGFR)HMM predict
118Phosphoserine(CK2)HMM predict
126Phosphotyrosine(Syk)HMM predict
146Phosphoserine(PKG)HMM predict
146O-linkedHMM predict
146Phosphoserine(CDC2)HMM predict
146Phosphoserine(IKK)HMM predict
148Phosphothreonine(MAPK)HMM predict
164Phosphoserine(PKG)HMM predict
167Phosphoserine(ATM)HMM predict
167Phosphoserine(CK1)HMM predict
169Phosphoserine(CK2)HMM predict
170Phosphoserine(CK1)HMM predict
176PhosphoserineHMM predict
179Phosphotyrosine(Abl)HMM predict
179SulfotyrosineHMM predict
181Phosphoserine(CK2)HMM predict
181Phosphoserine(ATM)HMM predict
190Phosphoserine(IKK)HMM predict
190PhosphoserineHMM predict
190Phosphoserine(CK2)HMM predict
191Phosphoserine(CK1)HMM predict
196N-linkedHMM predict
197N-linkedHMM predict
200N-linkedHMM predict
250Phosphotyrosine(Syk)HMM predict
250Phosphotyrosine(Abl)HMM predict
250SulfotyrosineHMM predict
250Phosphotyrosine(SRC)HMM predict
250Phosphotyrosine(INSR)HMM predict
250Phosphotyrosine(EGFR)HMM predict
264SulfotyrosineHMM predict
264Phosphotyrosine(INSR)HMM predict
264Phosphotyrosine(Syk)HMM predict
271Phosphoserine(CK2)HMM predict
273Phosphoserine(IKK)HMM predict
273Phosphoserine(ATM)HMM predict
275Phosphoserine(CK1)HMM predict
315Phosphoserine(CK2)HMM predict
317Phosphoserine(CK2)HMM predict
322Phosphoserine(IKK)HMM predict
417Phosphoserine(CK1)HMM predict
515Phosphoserine(ATM)HMM predict
515Phosphoserine(CAMK2)HMM predict
577Phosphoserine(PKA)HMM predict
586N-linkedHMM predict
590N-linkedHMM predict
622Phosphotyrosine(Abl)HMM predict
623SulfotyrosineHMM predict
637Phosphoserine(ATM)HMM predict
637O-linkedHMM predict
648Phosphotyrosine(EGFR)HMM predict
667Phosphothreonine(PKA)HMM predict
725TyrosineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001031732
  • Location:chr4 68858700-68898418
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER E2-MCF7GSE14664 68909866 68909905 39 11467
FoxA1 MCF7MACSdata 68898341 68898555 214 30
Oct1 HelaGSE14283 68911423 68911468 45 13027
Oct1 HelaGSE14283 68912499 68912540 41 14101
Oct1 HelaGSE14283 68912606 68912665 59 14217
Oct4 hESGSE17917 68898349 68898594 245 53
p130 SenescentGSE19898 68898165 68898714 549 21
p130 shRbQuiescentGSE19898 68898142 68898718 576 12
p130 shRbSenescentGSE19898 68898200 68898812 612 88
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 68851972 68852528 556 6451
CBP T30-glioblastomaGSE21026 68851854 68852158 304 6695
NRSF JurkatGSE13047 68852976 68853504 528 5461
NRSF JurkatSISSRdata 68853000 68853490 490 5456
NRSF mAbJurkat 68850793 68851651 858 7479
NRSF mAbJurkat 68852152 68854066 1914 5592
NRSF-mono JurkatQuESTdata 68852939 68853573 634 5445
NRSF-poly JurkatQuESTdata 68853032 68853487 455 5441
P300 T0-glioblastomaGSE21026 68851719 68852187 468 6748
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 68897899 68898882 983 0
FOXA1 MCF7GSE15244 68897635 68898804 1169 0
FOXA1 eGFPGSE10845 68897635 68898804 1169 0
H3K4me2 HCT116GSE10453 68896472 68897912 1440 0
H3K4me3 colorectalcancer 68895664 68895884 220 0
H3K4me3 colorectalcancer 68896692 68897912 1220 0
H3ac HepG2E 68896351 68898035 1684 0
KLF4 hESGSE17917 68898317 68898513 196 0
PHF8 293TGSE20725 68897716 68898813 1097 0
PHF8 Hs68minusFBSGSE20725 68897395 68898805 1410 0
PHF8 Hs68plusFBSGSE20725 68897469 68898987 1518 0
PolII HeLaGSE12783 68896966 68898909 1943 0
Rb SenescentGSE19898 68898044 68898693 649 0
TAF HelaGSE8489 68896315 68897999 1684 0
p130 QuiescentGSE19898 68898095 68898561 466 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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