AutismKB 2.0

Annotation Detail for RFT1


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Basic Information Top
Gene Symbol:RFT1 ( CDG1N,DKFZp667J092,FLJ25945 )
Gene Full Name: RFT1 homolog (S. cerevisiae)
Band: 3p21.1
Quick LinksEntrez ID:91869; OMIM: 611908; Uniprot ID:RFT1_HUMAN; ENSEMBL ID: ENSG00000163933; HGNC ID: 30220
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_052859
  • Location:chr3 53099850-53139502
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 53143769 53144024 255 4394
CTCF CD4SISSRdata 53143769 53144024 255 4394
CTCF G2GSE9613 53143832 53144087 255 4457
CTCF G2GSE9613 53153637 53153848 211 14240
ER MCF7GSE19013 53154181 53154818 637 14997
FOXA1 MCF7GSE15244 53139607 53140134 527 368
FOXA1 MCF7GSE15244 53154116 53155285 1169 15198
FoxA1 MCF7MACSdata 53154434 53154719 285 15074
H3K4me2 HCT116GSE10453 53139643 53140507 864 573
H3ac HepG2E 53138980 53140507 1527 241
Nanog ESGSE20650 53139368 53139838 470 101
Oct1 HelaGSE14283 53149890 53149921 31 10403
PHF8 HeLaGSE20725 53138948 53140126 1178 35
PHF8 Hs68plusFBSGSE20725 53138849 53140412 1563 128
RARA MCF7GSE15244 53154116 53155349 1233 15230
RARG MCF7GSE15244 53145248 53146111 863 6177
RARG MCF7GSE15244 53154116 53155024 908 15068
TFAP2C MCF7GSE21234 53144668 53145283 615 5473
TFAP2C MCF7GSE21234 53154055 53154990 935 15020
hScc1 BcellGSE12603 53143575 53144087 512 4329
hScc1 CdLSGSE12603 53143717 53144087 370 4400
p130 SenescentGSE19898 53139148 53140233 1085 188
p130 shRbQuiescentGSE19898 53139071 53140194 1123 130
p130 shRbSenescentGSE19898 53139053 53139956 903 2
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 53081728 53082112 384 17931
CTCF CD4SISSRdata 53081728 53082112 384 17931
CTCF G2GSE9613 53081115 53082171 1056 18208
CTCF G2GSE9613 53082628 53084051 1423 16511
CTCF G2GSE9613 53084648 53085026 378 15014
CTCF G2GSE9613 53086399 53087245 846 13029
CTCF G2GSE9613 53089935 53090268 333 9749
CTCF G2GSE9613 53097219 53097407 188 2538
CTCF G2GSE9613 53098969 53099383 414 675
ER MCF7GSE19013 53091923 53092396 473 7691
FOXA1 MCF7GSE15244 53080403 53080878 475 19210
FOXA1 MCF7GSE15244 53081721 53082090 369 17945
hScc1 BcellGSE12603 53081645 53082135 490 17961
hScc1 BcellGSE12603 53098610 53098789 179 1151
hScc1 CdLSGSE12603 53081609 53082066 457 18013
hScc1 G2GSE9613 53081542 53082349 807 17905
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 53123050 53123332 282 0
CTCF CD4SISSRdata 53123050 53123332 282 0
CTCF HelaGSE12889 53123015 53123251 236 0
CTCF G2GSE9613 53101185 53101578 393 0
CTCF G2GSE9613 53116896 53117071 175 0
CTCF G2GSE9613 53119026 53119476 450 0
CTCF G2GSE9613 53122895 53123910 1015 0
CTCF G2GSE9613 53138980 53139856 876 0
FOXA1 MCF7GSE15244 53138980 53139187 207 0
H3K4me2 HCT116GSE10453 53138980 53139149 169 0
Myc K562GSE19551 53119309 53119567 258 0
Nanog hESGSE18292 53112052 53112216 164 0
Oct1 H2O2-HelaGSE14283 53104183 53104220 37 0
Oct1 H2O2-HelaGSE14283 53105350 53105379 29 0
Oct1 HelaGSE14283 53104183 53104221 38 0
Oct1 HelaGSE14283 53124423 53124451 28 0
P300 T30-glioblastomaGSE21026 53138608 53140218 1610 0
PHF8 293TGSE20725 53138967 53139997 1030 0
PolII HeLaGSE12783 53138315 53140510 2195 0
TFAP2C MCF7GSE21234 53118175 53118638 463 0
VDR GM10855-stimGSE22484 53111116 53113961 2845 0
VDR GM10861-stimGSE22484 53109837 53113175 3338 0
VDR GM10861-stimGSE22484 53116442 53119991 3549 0
hScc1 BcellGSE12603 53122895 53123983 1088 0
hScc1 BcellGSE12603 53131457 53131603 146 0
hScc1 CdLSGSE12603 53122895 53123727 832 0
hScc1 G2GSE9613 53122895 53123757 862 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7b hsa-let-7b 22 18668040
hsa-let-7b* hsa-let-7b 22 18668040
hsa-miR-1 hsa-mir-1-2 18 18668040
hsa-miR-1 hsa-mir-1-1 20 18668040
hsa-miR-155 hsa-mir-155 21 18668040
hsa-miR-155* hsa-mir-155 21 18668040
hsa-miR-16 hsa-mir-16-1 13 18668040
hsa-miR-16 hsa-mir-16-2 3 18668040
hsa-miR-30a hsa-mir-30a 6 18668040
hsa-miR-30a* hsa-mir-30a 6 18668040
hsa-miR-30b hsa-mir-30b 8 18668040
hsa-miR-30b* hsa-mir-30b 8 18668040
hsa-miR-30c hsa-mir-30c-2 6 18668040
hsa-miR-30c hsa-mir-30c-1 1 18668040
hsa-miR-30c-1* hsa-mir-30c-1 1 18668040
hsa-miR-30c-2* hsa-mir-30c-2 6 18668040
hsa-miR-30d hsa-mir-30d 8 18668040
hsa-miR-30d* hsa-mir-30d 8 18668040
hsa-miR-30e hsa-mir-30e 1 18668040
hsa-miR-30e* hsa-mir-30e 1 18668040
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
1090 Unknown pSILAC miR-16 RFT1 down 50-25% 18668040
1192 Unknown pSILAC miR-1 RFT1 down 50-25% 18668040
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000163933 n_a n_a n_a "lymphoblast, leukocyte, lymphocyte, muscle cell" "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
ENSG00000163933 n_a n_a n_a "lymphoblast, leukocyte, lymphocyte, muscle cell" "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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