Annotation Detail for SLC38A5

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Basic Information Top

Gene Symbol:	SLC38A5 ( JM24,SN2,SNAT5,pp7194 )
Gene Full Name:	solute carrier family 38, member 5
Band:	Xp11.23
Quick Links	Entrez ID:92745; OMIM: 300649; Uniprot ID:S38A5_HUMAN; ENSEMBL ID: ENSG00000017483; HGNC ID: 18070
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
226	N-linked (GlcNAc...) (Potential).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	48215912	48216218	306	2557
H3ac	HepG2	E	48214034	48215228	1194	1123
TAF	k562	GSE8489	48214186	48215228	1042	1199
TFAP2C	MCF7	GSE21234	48214931	48215295	364	1605

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	48186255	48186511	256	15489
CTCF	G2	GSE9613	48190993	48191137	144	10807
Myc	K562	GSE19551	48195070	48195403	333	6635
NRSF	mAb	Jurkat	48185392	48186511	1119	15920
RUNX	Jurkat	GSE17954	48199107	48199181	74	2728
hScc1	G2	GSE9613	48201708	48201923	215	56

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	CD4	GSE12889	48212839	48212969	130
CTCF	CD4	SISSRdata	48212839	48212969	130
CTCF	G2	GSE9613	48201708	48202063	355
CTCF	G2	GSE9613	48203810	48205229	1419
CTCF	G2	GSE9613	48208276	48210861	2585
CTCF	G2	GSE9613	48211577	48211932	355
CTCF	G2	GSE9613	48212535	48214371	1836
H3ac	HepG2	E	48210550	48211714	1164
H3ac	HepG2	E	48212005	48213560	1555
NRSF	mAb	Jurkat	48207404	48207799	395
Oct1	H2O2-Hela	GSE14283	48210660	48210706	46
Oct1	Hela	GSE14283	48210658	48210708	50
RARA	MCF7	GSE15244	48207261	48207799	538
TAF	k562	GSE8489	48207261	48207799	538
TAF	k562	GSE8489	48212869	48213314	445
TFAP2C	MCF7	GSE21234	48201738	48202131	393
hScc1	Bcell	GSE12603	48211577	48211932	355
hScc1	G2	GSE9613	48203670	48204130	460
hScc1	G2	GSE9613	48204468	48205229	761
hScc1	G2	GSE9613	48208276	48208858	582
hScc1	G2	GSE9613	48212498	48213622	1124

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-let-7b	hsa-let-7b	22	18668040
hsa-let-7b*	hsa-let-7b	22	18668040
hsa-miR-1	hsa-mir-1-2	18	18668040
hsa-miR-1	hsa-mir-1-1	20	18668040
hsa-miR-155	hsa-mir-155	21	18668040
hsa-miR-155*	hsa-mir-155	21	18668040
hsa-miR-16	hsa-mir-16-1	13	18668040
hsa-miR-16	hsa-mir-16-2	3	18668040
hsa-miR-30a	hsa-mir-30a	6	18668040
hsa-miR-30a*	hsa-mir-30a	6	18668040
hsa-miR-30b	hsa-mir-30b	8	18668040
hsa-miR-30b*	hsa-mir-30b	8	18668040
hsa-miR-30c	hsa-mir-30c-2	6	18668040
hsa-miR-30c	hsa-mir-30c-1	1	18668040
hsa-miR-30c-1*	hsa-mir-30c-1	1	18668040
hsa-miR-30c-2*	hsa-mir-30c-2	6	18668040
hsa-miR-30d	hsa-mir-30d	8	18668040
hsa-miR-30d*	hsa-mir-30d	8	18668040
hsa-miR-30e	hsa-mir-30e	1	18668040
hsa-miR-30e*	hsa-mir-30e	1	18668040

ID in Tarbase	Data Type	Support Type	miRNA	Gene	Direct Support	Publication
1099	Unknown	pSILAC	miR-16	SLC38A5	down 50-25%	18668040
Ensembl	Protein Type	Differentially expressed in	Pathology or Event	Mis Regulation	Gene Expression	Tumour Involvement
ENSG00000017483		n_a	n_a	n_a	muscle cell	"benign tumour, malignant tumour"

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018