AutismKB 2.0

Annotation Detail for CD9


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Basic Information Top
Gene Symbol:CD9 ( 5H9,BA2,BTCC-1,DRAP-27,MIC3,MRP-1,P24,TSPAN29 )
Gene Full Name: CD9 molecule
Band: 12p13.31
Quick LinksEntrez ID:928; OMIM: 143030; Uniprot ID:CD9_HUMAN; ENSEMBL ID: ENSG00000010278; HGNC ID: 1709
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
52N-linked (GlcNAc...) (Potential).
53N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
9S-palmitoyl cysteine (Probable).Swiss-Prot 53.0
52N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
53N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
78S-palmitoyl cysteine (Probable).Swiss-Prot 53.0
79S-palmitoyl cysteine (Probable).Swiss-Prot 53.0
87S-palmitoyl cysteine (Probable).Swiss-Prot 53.0
218S-palmitoyl cysteine (Probable).Swiss-Prot 53.0
219S-palmitoyl cysteine (Probable).Swiss-Prot 53.0
Location(AA) Modification Resource
39Phosphoserine(IKK)HMM predict
52N-linkedHMM predict
53N-linkedHMM predict
78S-palmitoylHMM predict
79S-palmitoylHMM predict
125Phosphotyrosine(Syk)HMM predict
129Phosphotyrosine(Syk)HMM predict
134Phosphothreonine(PKC)HMM predict
216IsoleucineHMM predict
218S-palmitoylHMM predict
219S-palmitoylHMM predict
219S-farnesylHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001769
  • Location:chr12 6179815-6217687
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 6175125 6175380 255 4563
CTCF CD4SISSRdata 6175125 6175380 255 4563
CTCF JurkatGSE12889 6175165 6175479 314 4494
CTCF G2GSE9613 6159693 6160455 762 19742
CTCF G2GSE9613 6161226 6162217 991 18094
CTCF G2GSE9613 6162902 6163219 317 16755
CTCF G2GSE9613 6165361 6165595 234 14338
CTCF G2GSE9613 6167311 6167778 467 12271
CTCF G2GSE9613 6168451 6168888 437 11146
CTCF G2GSE9613 6174991 6175525 534 4558
FOXA1 DLD1GSE12801 6161421 6162217 796 17997
FOXA1 MCF7GSE15244 6161450 6162116 666 18033
FOXA1 MCF7GSE15244 6173303 6173648 345 6340
FOXA1 MCF7GSE15244 6177870 6178131 261 1815
Fos K562GSE19551 6169750 6170160 410 9861
H3ac HepG2E 6160203 6160484 281 19472
Oct1 H2O2-HelaGSE14283 6163875 6163907 32 15925
Rb SenescentGSE19898 6159908 6160281 373 19721
TFAP2C MCF7GSE21234 6161535 6162347 812 17875
USF1 HepG2E 6174683 6175525 842 4712
VDR GM10855-stimGSE22484 6161957 6163640 1683 17017
hScc1 BcellGSE12603 6175099 6175525 426 4504
hScc1 CdLSGSE12603 6174852 6175525 673 4627
hScc1 G2GSE9613 6162902 6163219 317 16755
hScc1 G2GSE9613 6175062 6175525 463 4522
hScc1 G2GSE9613 6179254 6180302 1048 38
p130 SenescentGSE19898 6159568 6160363 795 19850
p130 SenescentGSE19898 6161444 6161721 277 18233
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Gata2 K562GSE18868 6232695 6233160 465 15240
Oct1 H2O2-HelaGSE14283 6228509 6228541 32 10838
Oct1 H2O2-HelaGSE14283 6233046 6233074 28 15373
Oct1 HelaGSE14283 6228509 6228540 31 10837
PAX3-FKHR Rh4GSE19063 6232962 6233690 728 15639
RARA MCF7GSE15244 6220568 6221664 1096 3429
RARA MCF7GSE15244 6226887 6227154 267 9333
RARG MCF7GSE15244 6221291 6221664 373 3790
RARG MCF7GSE15244 6234108 6234355 247 16544
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 6179096 6181053 1957 0
CTCF G2GSE9613 6181761 6182173 412 0
CTCF G2GSE9613 6182910 6183339 429 0
CTCF G2GSE9613 6194379 6194754 375 0
CTCF G2GSE9613 6196101 6196341 240 0
CTCF G2GSE9613 6199570 6199712 142 0
CTCF G2GSE9613 6208135 6209030 895 0
CTCF G2GSE9613 6212045 6212225 180 0
CTCF G2GSE9613 6215504 6215957 453 0
ER MCF7GSE19013 6214602 6215239 637 0
FOXA1 DLD1GSE12801 6208693 6209504 811 0
FOXA1 DLD1GSE12801 6214719 6215546 827 0
FOXA1 MCF7GSE15244 6194981 6195991 1010 0
FOXA1 MCF7GSE15244 6201441 6202253 812 0
FOXA1 MCF7GSE15244 6208541 6209607 1066 0
FOXA1 MCF7GSE15244 6214353 6215713 1360 0
FOXA1 MCF7GSE15244 6216877 6217489 612 0
GATA3 MCF7GSE15244 6197666 6198055 389 0
GATA3 MCF7GSE15244 6201441 6202396 955 0
H3ac HepG2E 6204633 6205413 780 0
H3ac HepG2E 6205855 6206380 525 0
NRSF pAbJurkat 6196022 6196341 319 0
Nanog hESGSE18292 6194607 6194930 323 0
Oct1 H2O2-HelaGSE14283 6188578 6188605 27 0
RARA MCF7GSE15244 6194754 6196022 1268 0
RARA MCF7GSE15244 6201441 6202468 1027 0
RARA MCF7GSE15244 6214108 6215294 1186 0
RARG MCF7GSE15244 6194754 6196137 1383 0
RARG MCF7GSE15244 6201441 6202468 1027 0
RARG MCF7GSE15244 6208256 6209175 919 0
RARG MCF7GSE15244 6214287 6215221 934 0
Sox2 hESGSE18292 6194667 6194925 258 0
TFAP2C MCF7GSE21234 6208335 6209184 849 0
TFAP2C MCF7GSE21234 6214674 6215473 799 0
USF1 HepG2E 6209504 6212334 2830 0
USF2 HepG2E 6209754 6212225 2471 0
hScc1 G2GSE9613 6204633 6204981 348 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-181c hsa-mir-181c 19 19482995
hsa-miR-181c* hsa-mir-181c 19 19482995
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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