Annotation Detail for GPR56
Basic Information Top
| Gene Symbol: | GPR56 ( BFPP,DKFZp781L1398,TM7LN4,TM7XN1 ) |
|---|---|
| Gene Full Name: | G protein-coupled receptor 56 |
| Band: | 16q13 |
| Quick Links | Entrez ID:9289; OMIM: 604110; Uniprot ID:GPR56_HUMAN; ENSEMBL ID: ENSG00000205336; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 39 | N-linked (GlcNAc...) (Potential). | |
| 148 | N-linked (GlcNAc...) (Potential). | |
| 171 | N-linked (GlcNAc...) (Potential). | |
| 234 | N-linked (GlcNAc...) (Potential). | |
| 303 | N-linked (GlcNAc...) (Potential). | |
| 324 | N-linked (GlcNAc...) (Potential). | |
| 341 | N-linked (GlcNAc...) (Potential). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 39 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 148 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 171 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 234 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 303 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 324 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 341 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 689 | Phosphoserine | Phospho.ELM 6.0 |
| 690 | Phosphoserine | Phospho.ELM 6.0 |
| 691 | Phosphoserine | Phospho.ELM 6.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 5 | Phosphoserine(IKK) | HMM predict |
| 39 | N-linked | HMM predict |
| 41 | Phosphothreonine(PKC) | HMM predict |
| 78 | O-linked | HMM predict |
| 80 | Phosphoserine(IKK) | HMM predict |
| 141 | O-linked | HMM predict |
| 163 | Phosphoserine(IKK) | HMM predict |
| 171 | N-linked | HMM predict |
| 201 | Phosphoserine(PKG) | HMM predict |
| 214 | Phosphoserine(CK1) | HMM predict |
| 234 | N-linked | HMM predict |
| 303 | N-linked | HMM predict |
| 324 | N-linked | HMM predict |
| 341 | N-linked | HMM predict |
| 356 | Phosphoserine(CK1) | HMM predict |
| 368 | Phosphothreonine(PKC) | HMM predict |
| 373 | Phosphothreonine(PKA) | HMM predict |
| 542 | Phosphotyrosine(INSR) | HMM predict |
| 552 | Phosphothreonine(CDC2) | HMM predict |
| 670 | Phosphoserine(CDC2) | HMM predict |
| 685 | O-linked | HMM predict |
| 687 | Phosphoserine(IKK) | HMM predict |
| 689 | Phosphoserine(CDC2) | HMM predict |
- RefSeq ID: NM_005682
- Location:chr16 56211458-56256444
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 56191764 | 56192109 | 345 | 19522 |
| CTCF | CD4 | SISSRdata | 56191764 | 56192109 | 345 | 19522 |
| CTCF | G2 | GSE9613 | 56191570 | 56192110 | 540 | 19619 |
| Oct1 | H2O2-Hela | GSE14283 | 56207069 | 56207105 | 36 | 4372 |
| TFAP2C | MCF7 | GSE21234 | 56199817 | 56200112 | 295 | 11494 |
| TFAP2C | MCF7 | GSE21234 | 56209637 | 56210128 | 491 | 1576 |
| hScc1 | Bcell | GSE12603 | 56191642 | 56192149 | 507 | 19563 |
| hScc1 | Bcell | GSE12603 | 56200864 | 56201370 | 506 | 10342 |
| hScc1 | CdLS | GSE12603 | 56191854 | 56192353 | 499 | 19355 |
| hScc1 | CdLS | GSE12603 | 56200755 | 56201370 | 615 | 10396 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 56210942 | 56212373 | 1431 | 0 |
| CTCF | G2 | GSE9613 | 56213725 | 56213865 | 140 | 0 |
| CTCF | G2 | GSE9613 | 56216202 | 56216768 | 566 | 0 |
| ER | MCF7 | GSE19013 | 56213819 | 56214949 | 1130 | 0 |
| TAF | Hela | GSE8489 | 56213725 | 56214039 | 314 | 0 |
| TFAP2C | MCF7 | GSE21234 | 56214861 | 56215522 | 661 | 0 |
| p130 | shRbQuiescent | GSE19898 | 56219434 | 56219894 | 460 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7b | hsa-let-7b | 22 | 18668040 |
| hsa-let-7b* | hsa-let-7b | 22 | 18668040 |
| hsa-miR-1 | hsa-mir-1-2 | 18 | 18668040 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 18668040 |
| hsa-miR-155 | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-155* | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-16 | hsa-mir-16-1 | 13 | 18668040 |
| hsa-miR-16 | hsa-mir-16-2 | 3 | 18668040 |
| hsa-miR-30a | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30a* | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30b | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30b* | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-1* | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-2* | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30d | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30d* | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30e | hsa-mir-30e | 1 | 18668040 |
| hsa-miR-30e* | hsa-mir-30e | 1 | 18668040 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 856 | Unknown | pSILAC | let-7b | GPR56 | down 75-50% | 18668040 |
| 916 | Unknown | pSILAC | LNA_let-7b | GPR56 | up 50-75% | 18668040 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000205336 | n_a | n_a | n_a | n_a | n_a | |
| ENSG00000205336 | n_a | n_a | n_a | n_a | n_a |
Cis-Nats regulation