AutismKB 2.0

Annotation Detail for TRIP13


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Basic Information Top
Gene Symbol:TRIP13 ( 16E1BP )
Gene Full Name: thyroid hormone receptor interactor 13
Band: 5p15.33
Quick LinksEntrez ID:9319; OMIM: 604507; Uniprot ID:TRP13_HUMAN; ENSEMBL ID: ENSG00000071539; HGNC ID: 12307
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
31Phosphoserine(PKB)HMM predict
56SulfotyrosineHMM predict
85Phosphoserine(ATM)HMM predict
230Phosphothreonine(PKC)HMM predict
256Phosphoserine(CK1)HMM predict
268Phosphothreonine(PKA)HMM predict
300N-linkedHMM predict
352Phosphothreonine(PKC)HMM predict
365N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004237
  • Location:chr5 946003-971157
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
hScc1 BcellGSE12603 945392 946611 1219 2
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 976585 976908 323 5589
CTCF CD4SISSRdata 976585 976908 323 5589
CTCF G2GSE9613 972172 972640 468 1249
CTCF G2GSE9613 975732 977123 1391 5270
CTCF G2GSE9613 979507 980601 1094 8897
CTCF G2GSE9613 985502 985882 380 14535
CTCF G2GSE9613 989086 989332 246 18052
CTCF G2GSE9613 990439 990995 556 19560
ER Breast-CancerGSE22609 975702 976542 840 4965
FOXA1 MCF7GSE15244 972133 972852 719 1335
FoxA1 MCF7MACSdata 972456 972800 344 1471
RARA MCF7GSE15244 972133 972852 719 1335
Rb GrowingGSE19898 979867 980046 179 8799
TAFII hESGSE17917 976627 976918 291 5615
TFAP2C MCF7GSE21234 972245 973054 809 1492
TFAP2C MCF7GSE21234 983922 984377 455 12992
hScc1 BcellGSE12603 975964 977123 1159 5386
hScc1 BcellGSE12603 979543 980414 871 8821
hScc1 CdLSGSE12603 976409 977051 642 5573
hScc1 G2GSE9613 975890 977337 1447 5456
p130 shRbSenescentGSE19898 986105 986485 380 15138
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 964455 966639 2184 0
CTCF CD4GSE12889 956335 956461 126 0
CTCF CD4SISSRdata 956335 956461 126 0
CTCF JurkatGSE12889 965991 966139 148 0
CTCF G2GSE9613 950252 952963 2711 0
CTCF G2GSE9613 956807 957048 241 0
CTCF G2GSE9613 960586 961010 424 0
CTCF G2GSE9613 963167 963534 367 0
CTCF G2GSE9613 965389 966436 1047 0
CTCF G2GSE9613 968584 968984 400 0
CTCF G2GSE9613 969367 969798 431 0
E2F4 G0GSE7516 945847 947251 1404 0
GABP k562GSE8489 946611 948917 2306 0
H3ac HepG2E 949784 953362 3578 0
LIN9 G0GSE7516 945807 947319 1512 0
LIN9 SGSE7516 945590 947134 1544 0
P300 T30-glioblastomaGSE21026 964359 967105 2746 0
PHF8 293TGSE20725 945430 946599 1169 0
hScc1 G2GSE9613 965473 966436 963 0
p130 QuiescentGSE19898 945912 946327 415 0
p130 SenescentGSE19898 945728 946386 658 0
p130 shRbQuiescentGSE19898 945821 946307 486 0
p130 shRbSenescentGSE19898 945879 946426 547 0
p130 G0GSE7516 945807 947134 1327 0
p130 SGSE7516 945847 946710 863 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7b hsa-let-7b 22 18668040
hsa-let-7b* hsa-let-7b 22 18668040
hsa-miR-1 hsa-mir-1-2 18 18668040
hsa-miR-1 hsa-mir-1-1 20 18668040
hsa-miR-155 hsa-mir-155 21 18668040
hsa-miR-155* hsa-mir-155 21 18668040
hsa-miR-16 hsa-mir-16-1 13 18668040
hsa-miR-16 hsa-mir-16-2 3 18668040
hsa-miR-30a hsa-mir-30a 6 18668040
hsa-miR-30a* hsa-mir-30a 6 18668040
hsa-miR-30b hsa-mir-30b 8 18668040
hsa-miR-30b* hsa-mir-30b 8 18668040
hsa-miR-30c hsa-mir-30c-2 6 18668040
hsa-miR-30c hsa-mir-30c-1 1 18668040
hsa-miR-30c-1* hsa-mir-30c-1 1 18668040
hsa-miR-30c-2* hsa-mir-30c-2 6 18668040
hsa-miR-30d hsa-mir-30d 8 18668040
hsa-miR-30d* hsa-mir-30d 8 18668040
hsa-miR-30e hsa-mir-30e 1 18668040
hsa-miR-30e* hsa-mir-30e 1 18668040
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
1015 Unknown pSILAC miR-155 TRIP13 down 50-25% 18668040
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000071539 n_a n_a n_a "lymphocyte, epithelium" "benign tumour, malignant tumour, sarcoma, carcinoma, non-Hodgkin's"
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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