AutismKB 2.0

Annotation Detail for HMGN3


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Basic Information Top
Gene Symbol:HMGN3 ( DKFZp686E20226,PNAS-25,TRIP7 )
Gene Full Name: high mobility group nucleosomal binding domain 3
Band: 6q14.1
Quick LinksEntrez ID:9324; OMIM: 604502; Uniprot ID:HMGN3_HUMAN; ENSEMBL ID: ENSG00000118418; HGNC ID: 12312
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
6Phosphoserine (By similarity).
10Phosphothreonine.
27Phosphoserine.
31Phosphoserine.
33N6-acetyllysine.
38N6-acetyllysine.
90N6-acetyllysine.
93Phosphoserine.
Location(AA) Modifications Resource
10Phosphothreonine.Swiss-Prot 53.0
10PhosphothreoninePhospho.ELM 6.0
Location(AA) Modification Resource
6Phosphoserine(CDC2)HMM predict
6Phosphoserine(IKK)HMM predict
31Phosphoserine(PKG)HMM predict
46Phosphothreonine(PKC)HMM predict
47Phosphoserine(PKG)HMM predict
93Phosphoserine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004242
  • Location:chr6 79967682-80001173
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 80016445 80016802 357 15450
Oct1 H2O2-HelaGSE14283 80003096 80003128 32 1939
Oct1 HelaGSE14283 80003093 80003132 39 1939
RNAII Tamoxifen-MCF7GSE14664 80003087 80003131 44 1936
Sox2 hESGSE18292 80016796 80016960 164 15705
hScc1 BcellGSE12603 80016552 80016802 250 15504
hScc1 CdLSGSE12603 80016413 80016802 389 15434
hScc1 G2GSE9613 80016445 80016802 357 15450
p130 QuiescentGSE19898 80001036 80001337 301 13
p130 SenescentGSE19898 80001104 80001532 428 145
p130 shRbSenescentGSE19898 80001011 80001454 443 59
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER Fulvestrant-MCF7GSE14664 79948364 79948434 70 19284
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 80000231 80000473 242 0
CTCF G2GSE9613 80000895 80001224 329 0
Fos K562GSE19551 80000756 80001546 790 0
H3K4me3 colorectalcancer 80000275 80001006 731 0
H3ac HepG2E 80000542 80001006 464 0
Oct1 H2O2-HelaGSE14283 79997526 79997553 27 0
Oct1 HelaGSE14283 79997525 79997553 28 0
TFAP2C MCF7GSE21234 79992161 79992468 307 0
hScc1 BcellGSE12603 80000231 80000576 345 0
hScc1 BcellGSE12603 80001032 80001224 192 0
p130 SenescentGSE19898 80000046 80000833 787 0
p130 shRbQuiescentGSE19898 80000052 80001032 980 0
p130 shRbSenescentGSE19898 80000156 80000684 528 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
22836 mRNA chr6 80000153 80003229 193 mRNA HMGN3 chr6 79967682 80001174Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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