Annotation Detail for SNAP29

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Basic Information Top

Gene Symbol:	SNAP29 ( CEDNIK,FLJ21051,SNAP-29 )
Gene Full Name:	synaptosomal-associated protein, 29kDa
Band:	22q11.21
Quick Links	Entrez ID:9342; OMIM: 604202; Uniprot ID:SNP29_HUMAN; ENSEMBL ID: ENSG00000099940; HGNC ID: 11133
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
210	Phosphoserine (By similarity).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ER	MCF7	GSE19013	19541315	19541902	587	1683
ETS1	Jurkat	GSE17954	19542261	19543860	1599	231
FOXA1	MCF7	GSE15244	19542113	19542508	395	981
H3K4me2	HCT116	GSE10453	19541632	19542549	917	1201
H3K4me3	colorectal	cancer	19542221	19542508	287	927
H3ac	HepG2	E	19541209	19542659	1450	1358
NFkBII	GM15510	GSE19485	19542054	19543984	1930	273
PHF8	293T	GSE20725	19542266	19543793	1527	262
PHF8	HeLa	GSE20725	19542291	19544005	1714	144
RARA	MCF7	GSE15244	19541031	19542448	1417	1552
RARG	MCF7	GSE15244	19541700	19542448	748	1218
Rb	Growing	GSE19898	19543039	19543185	146	180
Rb	Quiescent	GSE19898	19542644	19542945	301	497
Rb	Senescent	GSE19898	19542998	19543264	266	161
USF1	HepG2	E	19541209	19542735	1526	1320
USF2	HepG2	E	19541632	19542735	1103	1108
hScc1	Bcell	GSE12603	19542299	19543527	1228	379
hScc1	CdLS	GSE12603	19542549	19543494	945	270
p130	Quiescent	GSE19898	19542479	19542692	213	706
p130	Quiescent	GSE19898	19542765	19542964	199	427
p130	shRbQuiescent	GSE19898	19542414	19542753	339	708
p130	shRbSenescent	GSE19898	19542643	19542950	307	495

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	CD4	GSE12889	19569882	19570264	382
CTCF	CD4	SISSRdata	19569882	19570264	382
CTCF	Hela	GSE12889	19569823	19570186	363
CTCF	Jurkat	GSE12889	19569855	19570051	196
CTCF	G2	GSE9613	19569664	19570156	492
ER	MCF7	GSE19013	19569819	19570523	704
ER	MCF7	GSE19013	19571644	19572381	737
H3K4me3	colorectal	cancer	19543121	19544317	1196
H3ac	HepG2	E	19543593	19544317	724
Myc	hES	GSE17917	19543158	19543657	499
Oct4	hES	GSE17917	19569903	19570205	302
P300	T30-glioblastoma	GSE21026	19569698	19570448	750
RARA	MCF7	GSE15244	19571581	19572535	954
RARG	MCF7	GSE15244	19571581	19572455	874
TFAP2C	MCF7	GSE21234	19569708	19570436	728
TFAP2C	MCF7	GSE21234	19571485	19572185	700
USF1	HepG2	E	19543593	19544317	724
hScc1	Bcell	GSE12603	19550454	19550945	491
hScc1	Bcell	GSE12603	19569700	19570371	671
hScc1	CdLS	GSE12603	19569737	19570371	634
hScc1	G2	GSE9613	19569809	19570156	347

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-let-7b	hsa-let-7b	22	18668040
hsa-let-7b*	hsa-let-7b	22	18668040
hsa-miR-1	hsa-mir-1-2	18	18668040
hsa-miR-1	hsa-mir-1-1	20	18668040
hsa-miR-155	hsa-mir-155	21	18668040
hsa-miR-155*	hsa-mir-155	21	18668040
hsa-miR-16	hsa-mir-16-1	13	18668040
hsa-miR-16	hsa-mir-16-2	3	18668040
hsa-miR-30a	hsa-mir-30a	6	18668040
hsa-miR-30a*	hsa-mir-30a	6	18668040
hsa-miR-30b	hsa-mir-30b	8	18668040
hsa-miR-30b*	hsa-mir-30b	8	18668040
hsa-miR-30c	hsa-mir-30c-2	6	18668040
hsa-miR-30c	hsa-mir-30c-1	1	18668040
hsa-miR-30c-1*	hsa-mir-30c-1	1	18668040
hsa-miR-30c-2*	hsa-mir-30c-2	6	18668040
hsa-miR-30d	hsa-mir-30d	8	18668040
hsa-miR-30d*	hsa-mir-30d	8	18668040
hsa-miR-30e	hsa-mir-30e	1	18668040
hsa-miR-30e*	hsa-mir-30e	1	18668040

ID in Tarbase	Data Type	Support Type	miRNA	Gene	Direct Support	Publication
1007	Unknown	pSILAC	miR-155	SNAP29	down 50-25%	18668040
Ensembl	Protein Type	Differentially expressed in	Pathology or Event	Mis Regulation	Gene Expression	Tumour Involvement
ENSG00000099940		n_a	n_a	n_a	"epithelium, lymphoblast, lymphocyte, muscle cell"	"benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma"

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018