AutismKB 2.0

Annotation Detail for COG1


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Basic Information Top
Gene Symbol:COG1 ( CDG2G,DKFZp762L1710,KIAA1381,LDLB )
Gene Full Name: component of oligomeric golgi complex 1
Band: 17q25.1
Quick LinksEntrez ID:9382; OMIM: 606973; Uniprot ID:COG1_HUMAN; ENSEMBL ID: ENSG00000166685; HGNC ID: 6545
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylalanine.
7Phosphoserine.
459Phosphoserine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
56Phosphotyrosine(EGFR)HMM predict
150S-palmitoylHMM predict
151S-palmitoylHMM predict
162Phosphoserine(CK1)HMM predict
164Phosphoserine(CK1)HMM predict
167Phosphoserine(IKK)HMM predict
221Phosphoserine(CK1)HMM predict
237Phosphothreonine(PKC)HMM predict
322MethyllysineHMM predict
428Phosphothreonine(PKC)HMM predict
436Phosphoserine(IKK)HMM predict
436O-linkedHMM predict
438Phosphoserine(CK2)HMM predict
439Phosphoserine(CDC2)HMM predict
454Phosphoserine(CK1)HMM predict
455Phosphoserine(CK1)HMM predict
457Phosphoserine(IKK)HMM predict
459Phosphoserine(CDK)HMM predict
459Phosphoserine(CDC2)HMM predict
542Phosphoserine(CK1)HMM predict
560Phosphotyrosine(Syk)HMM predict
639Phosphoserine(CK2)HMM predict
712O-linkedHMM predict
727Phosphoserine(CK1)HMM predict
727Phosphoserine(CK2)HMM predict
729Phosphoserine(CK1)HMM predict
732Phosphothreonine(PKC)HMM predict
733Phosphoserine(CK1)HMM predict
926PhosphoserineHMM predict
926Phosphoserine(PKC)HMM predict
942O-linkedHMM predict
963N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_018714
  • Location:chr17 68700767-68716237
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 68699265 68699460 195 1405
CTCF CD4SISSRdata 68699265 68699460 195 1405
CTCF G2GSE9613 68697292 68697533 241 3355
CTCF G2GSE9613 68699805 68700509 704 611
FOXA1 MCF7GSE15244 68695031 68695633 602 5436
FoxA1 MCF7MACSdata 68695004 68695346 342 5593
H3ac HepG2E 68692511 68692756 245 8134
H3ac HepG2E 68699769 68700085 316 841
LIN9 SGSE7516 68699769 68699974 205 896
Oct1 HelaGSE14283 68697076 68697105 29 3677
PHF8 293TGSE20725 68699674 68701546 1872 158
PHF8 HeLaGSE20725 68699524 68701621 2097 195
USF1 HepG2E 68690345 68690831 486 10180
USF1 HepG2E 68696709 68697533 824 3647
USF1 HepG2E 68697978 68698128 150 2715
USF2 HepG2E 68690345 68690797 452 10197
USF2 HepG2E 68695031 68695633 602 5436
hScc1 BcellGSE12603 68697190 68697533 343 3406
hScc1 BcellGSE12603 68699850 68701272 1422 207
hScc1 CdLSGSE12603 68697117 68697533 416 3443
hScc1 CdLSGSE12603 68700150 68700997 847 194
p130 QuiescentGSE19898 68699199 68699754 555 1291
p130 SenescentGSE19898 68699263 68699948 685 1162
p130 shRbQuiescentGSE19898 68699194 68699810 616 1266
p130 shRbSenescentGSE19898 68699137 68699851 714 1274
p130 shRbSenescentGSE19898 68700390 68700524 134 311
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 68700962 68701308 346 0
ETS1 JurkatGSE17954 68699884 68701680 1796 0
Fos K562GSE19551 68708861 68709474 613 0
H3ac HepG2E 68701272 68701865 593 0
H3ac HepG2E 68702509 68702794 285 0
P300 T30-glioblastomaGSE21026 68700066 68701557 1491 0
TFAP2C MCF7GSE21234 68700599 68701058 459 0
USF1 HepG2E 68710787 68711578 791 0
USF2 HepG2E 68710847 68711408 561 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
11602 mRNA COG1 chr17 68700777 68716238 191 mRNA FLJ14775 chr17 68715099 68740013Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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