Annotation Detail for SNRNP40
Basic Information Top
| Gene Symbol: | SNRNP40 ( 40K,FLJ41108,HPRP8BP,MGC1910,PRP8BP,PRPF8BP,RP11-490K7.3,SPF38,WDR57 ) |
|---|---|
| Gene Full Name: | small nuclear ribonucleoprotein 40kDa (U5) |
| Band: | 1p35.2 |
| Quick Links | Entrez ID:9410; OMIM: 607797; Uniprot ID:SNR40_HUMAN; ENSEMBL ID: ENSG00000060688; HGNC ID: 30857 |
| Relate to Another Database: | SFARIGene; denovo-db |
Post Translation Modification- RefSeq ID: NM_004814
- Location:chr1 31505001-31542230
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3ac | HepG2 | E | 31540796 | 31543769 | 2973 | 52 |
| p130 | shRbSenescent | GSE19898 | 31541784 | 31542732 | 948 | 28 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3K4me3 | colorectal | cancer | 31541018 | 31542114 | 1096 | 0 |
| H3ac | HepG2 | E | 31538732 | 31538999 | 267 | 0 |
| LIN9 | G0 | GSE7516 | 31541488 | 31542677 | 1189 | 0 |
| Rb | Growing | GSE19898 | 31542067 | 31542295 | 228 | 0 |
| Rb | Quiescent | GSE19898 | 31541998 | 31542350 | 352 | 0 |
| Rb | Senescent | GSE19898 | 31541632 | 31542621 | 989 | 0 |
| Rb | shRbSenescence | GSE19898 | 31542039 | 31542298 | 259 | 0 |
| TAF | k562 | GSE8489 | 31540796 | 31542459 | 1663 | 0 |
| p130 | Senescent | GSE19898 | 31541691 | 31542677 | 986 | 0 |
| p130 | shRbQuiescent | GSE19898 | 31541619 | 31542318 | 699 | 0 |
| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 510 | EST | chr1 | 31405304 | 31405866 | 562 | mRNA | WDR57 | chr1 | 31401613 | 31438704 | Non-exonic Bidirectional (NOB) pairs | |