AutismKB 2.0

Annotation Detail for RP1L1


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Basic Information Top
Gene Symbol:RP1L1 ( DCDC4B )
Gene Full Name: retinitis pigmentosa 1-like 1
Band: 8p23.1
Quick LinksEntrez ID:94137; OMIM: 608581; Uniprot ID:A6NKC6_HUMAN; ENSEMBL ID: ENSG00000183638; HGNC ID: 15946
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_178857
  • Location:chr8 10501271-10550026
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 10552934 10553696 762 3289
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 10493407 10493908 501 7614
CTCF CD4GSE12889 10485136 10485379 243 16014
CTCF CD4SISSRdata 10485136 10485379 243 16014
CTCF G2GSE9613 10482075 10482520 445 18974
CTCF G2GSE9613 10484887 10485770 883 15943
CTCF G2GSE9613 10486149 10487005 856 14695
CTCF G2GSE9613 10487685 10488107 422 13376
CTCF G2GSE9613 10491848 10492534 686 9081
CTCF G2GSE9613 10495848 10496784 936 4956
FOXA1 MCF7GSE15244 10488005 10488413 408 13063
NFkBII GM12892GSE19485 10494464 10495461 997 6309
NRSF pAbJurkat 10496260 10496644 384 4820
P300 T30-glioblastomaGSE21026 10493182 10494039 857 7661
STAT1 IFNSISSRdata 10484885 10485509 624 16075
hScc1 BcellGSE12603 10481969 10482736 767 18919
hScc1 BcellGSE12603 10484887 10485553 666 16052
hScc1 BcellGSE12603 10487592 10488071 479 13440
hScc1 CdLSGSE12603 10482038 10482736 698 18885
hScc1 CdLSGSE12603 10484714 10485553 839 16138
hScc1 G2GSE9613 10481812 10482595 783 19068
hScc1 G2GSE9613 10484887 10485806 919 15925
p130 SenescentGSE19898 10485136 10485384 248 16012
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 10503954 10504344 390 0
CTCF G2GSE9613 10507481 10508374 893 0
CTCF G2GSE9613 10509867 10510014 147 0
CTCF G2GSE9613 10517936 10518207 271 0
CTCF G2GSE9613 10519499 10519846 347 0
CTCF G2GSE9613 10521136 10521818 682 0
CTCF G2GSE9613 10530620 10530944 324 0
CTCF G2GSE9613 10531604 10531950 346 0
CTCF G2GSE9613 10539282 10539528 246 0
CTCF G2GSE9613 10540437 10540885 448 0
CTCF G2GSE9613 10548925 10549342 417 0
ER E2-MCF7GSE14664 10526370 10526407 37 0
FOXA1 DLD1GSE12801 10547897 10548056 159 0
FOXA1 DLD1GSE12801 10548606 10548881 275 0
Fos K562GSE19551 10544564 10545184 620 0
NRSF pAbJurkat 10520507 10521244 737 0
Nanog hESGSE18292 10531455 10531759 304 0
TAFII hESGSE17917 10539536 10539742 206 0
hScc1 BcellGSE12603 10518390 10518753 363 0
hScc1 BcellGSE12603 10530620 10530944 324 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
25057 mRNA LOC203076 chr8 10567556 10595513 27957 mRNA RP1L1 chr8 10516015 10607107 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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