AutismKB 2.0

Annotation Detail for NTN1


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:NTN1 ( NTN1L )
Gene Full Name: netrin 1
Band: 17p13.1
Quick LinksEntrez ID:9423; OMIM: 601614; Uniprot ID:NET1_HUMAN; ENSEMBL ID: ENSG00000065320; HGNC ID: 8029
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
95N-linked (GlcNAc...) (Potential).
116N-linked (GlcNAc...) (Potential).
131N-linked (GlcNAc...) (Potential).
417N-linked (GlcNAc...) (Potential).
532Cell attachment site (Potential).
Location(AA) Modifications Resource
95N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
116N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
131N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
417N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
95N-linkedHMM predict
116N-linkedHMM predict
125Phosphotyrosine(Abl)HMM predict
125Phosphotyrosine(EGFR)HMM predict
131N-linkedHMM predict
368S-palmitoylHMM predict
417N-linkedHMM predict
446Phosphoserine(CDC2)HMM predict
460O-linkedHMM predict
461O-linkedHMM predict
461O-linkedHMM predict
601S-farnesylHMM predict
601CysteineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004822
  • Location:chr17 8865583-9084077
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER MCF7GSE19013 8847221 8847600 379 18173
H3K27me3 colorectalcancer 8861401 8862366 965 3700
NFkBII GM10847GSE19485 8864659 8865883 1224 313
Oct1 HelaGSE14283 8849439 8849470 31 16129
RARG MCF7GSE15244 8860762 8862052 1290 4177
hScc1 BcellGSE12603 8846952 8847861 909 18177
hScc1 BcellGSE12603 8865017 8865447 430 352
hScc1 CdLSGSE12603 8865017 8866019 1002 66
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
P300 T30-glioblastomaGSE21026 9088170 9089120 950 4568
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 9045971 9046302 331 0
CTCF JurkatGSE12889 8964626 8964748 122 0
CTCF G2GSE9613 8867104 8867762 658 0
CTCF G2GSE9613 9006651 9006964 313 0
CTCF G2GSE9613 9014602 9014955 353 0
Fos K562GSE19551 9009647 9010030 383 0
FoxA1 MCF7MACSdata 8995239 8995449 210 0
NRSF-mono JurkatQuESTdata 9074815 9075213 398 0
Nanog ESGSE20650 8898202 8899328 1126 0
Nanog hESGSE18292 8906516 8906772 256 0
Nanog hESGSE18292 8960920 8961102 182 0
Oct1 H2O2-HelaGSE14283 8868324 8868358 34 0
Oct1 HelaGSE14283 8868325 8868357 32 0
Oct1 HelaGSE14283 8971783 8971848 65 0
Oct1 HelaGSE14283 9022168 9022214 46 0
Oct1 HelaGSE14283 9066049 9066084 35 0
Oct4 ESGSE20650 8953737 8954218 481 0
Oct4 hESGSE21916 8898291 8899504 1213 0
PAX3-FKHR Rh4GSE19063 9057188 9058235 1047 0
RARG MCF7GSE15244 8894927 8895424 497 0
RARG MCF7GSE15244 8917159 8918584 1425 0
RARG MCF7GSE15244 8973548 8974031 483 0
RARG MCF7GSE15244 9008661 9009086 425 0
STAT1 HeLaGSE12782 9072051 9073299 1248 0
STAT1 HeLaGSE12783 9072085 9073299 1214 0
STAT1 IFNSISSRdata 9072308 9073168 860 0
Stat6 IL-4-hr4GSE17850 9018615 9019073 458 0
TFAP2C MCF7GSE21234 8894736 8895676 940 0
TFAP2C MCF7GSE21234 8976990 8977654 664 0
TFAP2C MCF7GSE21234 9029885 9030363 478 0
TFAP2C MCF7GSE21234 9040188 9041525 1337 0
TFAP2C MCF7GSE21234 9050957 9051341 384 0
TFAP2C MCF7GSE21234 9055145 9055635 490 0
hScc1 BcellGSE12603 8866527 8867243 716 0
hScc1 BcellGSE12603 8909371 8909655 284 0
hScc1 BcellGSE12603 8914935 8915087 152 0
hScc1 BcellGSE12603 8973207 8973548 341 0
hScc1 BcellGSE12603 8990413 8990624 211 0
hScc1 BcellGSE12603 9070024 9070173 149 0
hScc1 BcellGSE12603 9071005 9071175 170 0
hScc1 BcellGSE12603 9078466 9078777 311 0
hScc1 BcellGSE12603 9083426 9084616 1190 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
10633 mRNA NTN1 chr17 8865583 9084078 8050 HTC chr17 9015110 9023160 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved